Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01023 ATGGCGAGCCCAGAAGAAGCAAAGCTCGAAATTTTCATGCAGTGGTTACAGGCAAATGGGGTGGAGCTACGAGGTTGCAAGATCAAGTGCTGTGATTCCAAACGAGGGTTTGGCATCTTTTATGAAAAAGATGTTTCTGATGGGGTTATATTGGTTGTTCCACTAGATTTAGCCATTACTCCAATGAGGGTGTTGCAAGATCCTCTTCTAGGACCAGCATGTAGAGCAATGTTTGAAGAAGGAGATGTAGATGACAGGTTGCTAATGATGCTGTTTTTGACCGTGGAGCGTTTGCGTAAGAATTCTCTATGGAAGCCGTACCTTGATATGCTTCCAACCACTTTTGGGAATCCACTTTGGTTTAGTGATGATGAACTTCAAGAACTAAGAGGAACAAACTTATATCGTGCGACAGAATTGCAGATGAAAAGCTTGCTTTCTTTGTTCGAAACTAAAGTGAAGGATATAGTGAAGAAACTTTTGACTCTTGATGGAAATTCAGAGATGTATGTGCTGGAGCTAATTAATGTTGGATATATGAATATGGTCCTATTCAGTGAGGTGTTATTTGAAGATTTCCTGTGGGCGAACTCAATATTTTGGACCCGTGCTTTGAACATTCCAATGCCTCGATCTTATGTATTTCCAGGAATGCAAGATGATCATGACAGTTGCATACTAGAAGCCGATGGAAAGAGAAGCCAGGTTAAAAAATCTAACCATCTGACCAAGGAAATGACATGTAATAGTAACACCGTGACAGGAGAAACTGTTTGGGTAGAGGGTCTTGTCCCTGGCATTGACTTTTGTAACCATGATCTGAAGCCGATAGCGACATGGGAAGTTGATGGAACTGGTTTAGCAACTGGGGTTCCTTTCTCTATGTATCTTATTTTGGCTGCTCAAAGTCCCTTGCAGAATGACCAAGAAATTTCCATTAGTTATGGAAACAAGGGAAATGAGGAACTTCTCTATCTTTATGGTTTTGTCATTGATGAGAACACTGATGACTATGTCATGGTCCACTATCCAGCAGAAGCAATGAATACTATTTCCTTTTCAGACTCCAAATGCCAGCTTCTTGAAGCTCAGAATGCTGAAATGAGATGTCTTTTACCCAAAACGTTGCTGGATAATGGATTTTTTCCACTGGGGACCCAAAACAGTGGAGAAGATAACAAGGGAAAAGCTGACCAAGTTTGCAACTATAGTTGGAGCGGTCAGCGCAAGATGCCGTCTTATGTAAACAAGCTGGTGTTTCCTGAGAAATTTATGACTACTTTGAGAACCATAGCCATGCAAGAAGAAGAGCTTTACAAGGTTTCATCAATGCTGGAAGAGGTTCAGTTTCTATACAATATTTTACTTCATATTTCGCTTGAAATGTTAGACTATTGA 1398 0.4056 MASPEEAKLEIFMQWLQANGVELRGCKIKCCDSKRGFGIFYEKDVSDGVILVVPLDLAITPMRVLQDPLLGPACRAMFEEGDVDDRLLMMLFLTVERLRKNSLWKPYLDMLPTTFGNPLWFSDDELQELRGTNLYRATELQMKSLLSLFETKVKDIVKKLLTLDGNSEMYVLELINVGYMNMVLFSEVLFEDFLWANSIFWTRALNIPMPRSYVFPGMQDDHDSCILEADGKRSQVKKSNHLTKEMTCNSNTVTGETVWVEGLVPGIDFCNHDLKPIATWEVDGTGLATGVPFSMYLILAAQSPLQNDQEISISYGNKGNEELLYLYGFVIDENTDDYVMVHYPAEAMNTISFSDSKCQLLEAQNAEMRCLLPKTLLDNGFFPLGTQNSGEDNKGKADQVCNYSWSGQRKMPSYVNKLVFPEKFMTTLRTIAMQEEELYKVSSMLEEVQFLYNILLHISLEMLDY 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01023 465 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 7 445 - -
Spst1g01023 465 Pfam SET domain 81 316 IPR001214 GO:0005515
Spst1g01023 465 CDD SET_LSMT 32 330 - -
Spst1g01023 465 Gene3D set domain protein methyltransferase, domain 1 5 330 - -
Spst1g01023 465 SUPERFAMILY SET domain 8 334 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01023 Spst-Chr1 12568551 12579084 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Spst1g01023 SET 3e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01023 - - vun:114183365 782.326