Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01018 ATGCATGGAATCAATCCATGTTTTGATCGATGGTGTTCCGTTTCAGTCACGTCCTCGTTTGGTGAATTGATGGGGGTAGGTGGTAATTTCTGGGAGCTGTTGAAGCCGTATGGGCGTCGCGAGGGTTTTGATTTCTTGAGGAACAAGCGAGTTGCTGTGGACCTTTCATTCTGGATTGTTCAGCATGAGAATGCCATGAAGGCCACTCATGTCAGAAAACCCCACCTTAGACTCACCTTTTTCCGCACCATCAATCTCTTCTCCAAGTTTGGGGCACTTCCTGTGTTCATTGTTGATGGGACTCCATCTCCATTGAAATCACAGGCCAGGATTGCGAGATATTTCCGGTCTTCTGGCATTGAGTTGACTAGCTTGCCAGTGCCTGAAGAAGGTGTTTCATCTGAGAGGAGCAGTCTCTTTTCAAGTCGTGTTCAAGAATGTGTGGAACTAGTTAAACTACTTGGAATGCCTGTACTAAAGGCTAAGGGAGAGGCCGAAGCACTCTGTGCTCAATTAAATAGTGAAGGTCATGTAGATGCTTGCATCACAGCTGACAACACGAACAACAAACAGAGGATGGGTCCAGTTGATATAAACATTGGATTATACACTTTTATTTCTACTGAGGAACCGTTTGAATGCTACAACATGTCAGATATTGAAGCTGGACTTGGATTGAAGAGGAAACATTTGATAGCTATCTCTCTTTTGGTTGGAAATGATCATGATATGAATGGTGTCCGAGGAATTGGGGTTGATAATGCACTTCACTTTGTTAAAGCTTTTAATGAAGATGATATCTTGAATAGATTGCAGGAGATAGGAAAAGGGGGAAATACTTTACAAATTCCCATTTGCATTAAATTTGAAGACAACATAGATGTTGATCGAAACTCCCCGGATAAAAAACAATCTCATTGCTCTTTCTGTGGGCATCCTGGCAGCAAGAAAGATCATATGAAATTTTCATGTGAATACTGTGTCATAAAGGATGATGAAGGCTGCCAGAGAAAATCAGAGGGTTTTAGATGTGATTGCTTCTCATGTGTTGCGAATAGGAAACATAAGGAGCAAAAAAGACGGGAAAATTGGCACTCAAAAATTTGTCACAAAATTGCAGAGGAGCCTAACTTTCCCAAAGATGAAATCATTGACATATATTTATGTAATGACAATGGTTACTTTTCAGCAAGTGATGGTCCTCAGATCGAATGGGGAAAACCCAATATTGAGATGCTGATTGATTTTTTAAAATTCCATCAGCATTGGGAACCATCCTACATTAGACGGACGATGTTTCCTATGATGTCCACCATCTTTCTGAGAGATATGTCTACACCTACCGTAGAAACTTTGTTATTTGGGCAATATGAGTTTGATTCGGTAGAACGTGTGAGGATGAGATATGGATATCAGTTTTATGTGGTCAAGTGGAAACGTGCAGGGGGGCACATCGTCACTGGCAAAGATCCACCGAAGGAATCCAGTGTGCAACAAGATGTCACAGAGCTTGATGAAATGGTGGATCTACTAGACTACTGCGATGTTCCTGAGATTCGTGAAGATGATGGAAATTTTCTGTTTACAGATGAAAATATGGACCTCGTAGCAACTGCTTTTCCAGCACAAGTCCAAAGTTTTTTGCAGGAGCAGGAAAGGAAAAGAAAAAGGAATTCATCATCAAGTTGCCAAGAAAATGAAAAATCAGCTTCACCAAACTCAAGAAGTACTCAGCTCAACATTACAGAGTTCTTCCCATCAACCAAAATTAAACATCGTCAATCAAAACAAGGAGAAGAATCATCCAAGAATGATGATAGTGAAGGCAGCAGGGATTCAAAAATGAAAAGAAAAAAGTCCAGTCCTGACAAGATTCCAAAATCTGTGAGGCGTCGCCTGTTGTTTGACTAG 1911 0.4097 MHGINPCFDRWCSVSVTSSFGELMGVGGNFWELLKPYGRREGFDFLRNKRVAVDLSFWIVQHENAMKATHVRKPHLRLTFFRTINLFSKFGALPVFIVDGTPSPLKSQARIARYFRSSGIELTSLPVPEEGVSSERSSLFSSRVQECVELVKLLGMPVLKAKGEAEALCAQLNSEGHVDACITADNTNNKQRMGPVDINIGLYTFISTEEPFECYNMSDIEAGLGLKRKHLIAISLLVGNDHDMNGVRGIGVDNALHFVKAFNEDDILNRLQEIGKGGNTLQIPICIKFEDNIDVDRNSPDKKQSHCSFCGHPGSKKDHMKFSCEYCVIKDDEGCQRKSEGFRCDCFSCVANRKHKEQKRRENWHSKICHKIAEEPNFPKDEIIDIYLCNDNGYFSASDGPQIEWGKPNIEMLIDFLKFHQHWEPSYIRRTMFPMMSTIFLRDMSTPTVETLLFGQYEFDSVERVRMRYGYQFYVVKWKRAGGHIVTGKDPPKESSVQQDVTELDEMVDLLDYCDVPEIREDDGNFLFTDENMDLVATAFPAQVQSFLQEQERKRKRNSSSSCQENEKSASPNSRSTQLNITEFFPSTKIKHRQSKQGEESSKNDDSEGSRDSKMKRKKSSPDKIPKSVRRRLLFD 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01018 636 CDD PIN_GEN1 25 230 - -
Spst1g01018 636 Gene3D - 226 287 - -
Spst1g01018 636 MobiDBLite consensus disorder prediction 548 636 - -
Spst1g01018 636 MobiDBLite consensus disorder prediction 589 619 - -
Spst1g01018 636 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 226 443 IPR036279 -
Spst1g01018 636 Gene3D - 24 187 - -
Spst1g01018 636 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 231 246 IPR006084 -
Spst1g01018 636 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 48 62 IPR006084 -
Spst1g01018 636 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 94 113 IPR006084 -
Spst1g01018 636 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 151 168 IPR006084 -
Spst1g01018 636 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 24 580 IPR006084 -
Spst1g01018 636 Pfam XPG I-region 155 185 IPR006086 GO:0004518
Spst1g01018 636 FunFam Flap endonuclease GEN-like 1 226 282 - -
Spst1g01018 636 SMART xpgn3 24 120 IPR006085 GO:0004518
Spst1g01018 636 MobiDBLite consensus disorder prediction 563 588 - -
Spst1g01018 636 Pfam XPG N-terminal domain 24 116 IPR006085 GO:0004518
Spst1g01018 636 SUPERFAMILY PIN domain-like 29 241 IPR029060 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01018 39 352 Core DNA Replication Machinery Family AT5G26680 24.854 4.40e-13 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01018 K15338 - gmx:100779848 957.207