Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01015 ATGTTGGGTTCAGGTACCAATTTGGTGACCACGGTCATTGGGTTTGGCATGAGTGCCACTTTCATTGTGTTTGTCTGCACCAGAATCATTTGTGGAAGGCTGAGAGGGGGAGTTGAATCTCGGATGGTGTATGAGATTGAATCTAGAATTGATATAGAACAGCCAGAACATCATGTTAATGACCCTGAATCCGAACCTGTTCTGCTTGAGGCAATCCCTACTTTGAAGTTCAACCAAGAGGCTTTCAGTTCCCTCGAACACACACAGTGTGTAATATGTTTGGCAGATTACAAAGAACGAGAAGTATTGCGCATTATGCCCAAATGTGGCCACACTTTTCATCTTTCTTGCATTGATATATGGCTGAGAAAACAATCTACCTGTCCAGTATGCCGTCTGCCATTGAAAAACACTTCTGAAACAAAACATGTGAGACCTGTGACATTTACCATGAGCCAATCCCTTGACGAGTCTCATACATCAGAAAGAAATGAAGATATTGAGAGACATGTTGAACCTACACCTACTGCAGCCAGTAACACTTTACAACCAACTTCGGGCGAACAAGAAGCTGGGCAATGA 582 0.4313 MLGSGTNLVTTVIGFGMSATFIVFVCTRIICGRLRGGVESRMVYEIESRIDIEQPEHHVNDPESEPVLLEAIPTLKFNQEAFSSLEHTQCVICLADYKEREVLRIMPKCGHTFHLSCIDIWLRKQSTCPVCRLPLKNTSETKHVRPVTFTMSQSLDESHTSERNEDIERHVEPTPTAASNTLQPTSGEQEAGQ 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01015 193 MobiDBLite consensus disorder prediction 158 172 - -
Spst1g01015 193 MobiDBLite consensus disorder prediction 174 193 - -
Spst1g01015 193 SUPERFAMILY RING/U-box 80 138 - -
Spst1g01015 193 Pfam Ring finger domain 89 132 IPR001841 -
Spst1g01015 193 ProSiteProfiles Zinc finger RING-type profile. 90 132 IPR001841 -
Spst1g01015 193 PANTHER OS11G0150450 PROTEIN 1 165 - -
Spst1g01015 193 SMART ring_2 90 131 IPR001841 -
Spst1g01015 193 MobiDBLite consensus disorder prediction 150 193 - -
Spst1g01015 193 CDD RING-H2_EL5-like 89 132 - -
Spst1g01015 193 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 142 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01015 Spst-Chr1 12521521 12523236 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01015 70 135 C3H Transcription Factor Family AT4G10160 50.000 9.58e-19 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01015 - - gmx:100790202 379.793
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g01015 1 12521521 12523236 Spst1g01015 1 12521521 12523236 ECH