Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01013 ATGAAGCATAAACCGTTTCTGGGTGTTTCTGATTCTGAGGAAACTGCTTCTGGTTTGTATATTGTTGAGAGTTGGCAAAGCAAAGTCTTGGGGTTGGTTTGTGATCCTTTGAGGCATTTCTATGCCACTACTTTAGCTTATCCATTCTTAAAAGATTCATCTTTGACACTGTCATGGTTGAACAGTAAAGTTGGGGTTTTGTTTCCCATAGACCAATATACCCCTAGAAAGGATGACATATTACATTTGTGCGATGTGCTAGTGGGGCATGTTTTGGTACTTCAGTTTTGTTGGTCGAGCCATGCTTTCAGTAAACTAGCTTTGTGTGATCATAGTAGATTCTCGAAGTTGTTGGGGGCTTGGCTTTGTTGTGTTTCATTTGTGGCAGCTAATCATCTGTTCCGCGCCTACCAAACCAAAACCATGGTGGAAGATGGTGATGAGGTTGCAGTTGATGCACGTTCCACAGAAGACTGGTTGTTGCATGCACAGGAACTTGTTCCTATTGTCCTTGATAAGGCTAGAGAGGTTAAGGGATTTGCTGGTAGATGGAAGATGATCATTGCAAAATTGGAACAGATCCCGTCGCGATTATCAGATTTGTCAAGCCATCCATGCTTCTCAAAGAATGCTCTATGCAAGGAGCAGTTGCAGGCTGTGTCAAAGACGCTTGGGGAAGCGATTGAATTAGCTGAGTTGTGTATGAATGAGAAGTATGAGGGTAAGCTTCGGATGCAGAGTGATCTAGATGCATTGGCTGGGAAGCTCGATTTGAATTTGAGGGATTGTGGGCTTTTGATCAAGACTGGTGTGCTTGGTGAGGCTACTTTACCATTAGCTGTGTCTAGCTCTGTGGCAGAATCAGATGTTGCAACACACAGCAACATAAGGGAATTGCTGGCACGTCTTCAGATCGGGCACTTGGAAGCGAAGCACCGAGCTCTAGACAGCATTGTTGAGGCCATGAAGGAAGATGAGAAAAATGTTTTAGCTGCTCTTGGTCGAAGCAACATTTCTGCTTTGGTTCAATTGCTTACAGCTACCTCTCCCAGGATAAGAGAGAAAACAGTTACTGTTATATGCTCACTTGCGGAGTCTGGTAGTTGCGAAAATTGGCTAGTTTCTGAGGGAGTTTTGCCACCTCTAATAAGGCTTGTTGAATCTGGCAGTGCAGTTGGGAAGGAGAAGGCAACTATATCCCTCCAGAGGTTGTCTATGTCAGCCGAAACAGCCCGGGCGATCGTGGGGCATGGTGGGGTTCGTCCATTGGTTGAACTTTGTCAAACTGGGGATTCTGTATCACAGGCTGCGGCTGCTTGTACTCTGAAGAACATATCAGCTGTGCCAGAGGTGAGACAAACTTTGGCCGAAGAAGGAATCGTGAGGATTATGATCAATCTACTTAACTGTGGAATACTGTTAGGTTCCAAAGAGCATGCTGCAGAATGTTTGCAAAATCTCACTGCAAGCAATGAGAATCTAAGGAGGAGTGTCATATCAGAAGGTGGTGTTAGGAGTCTTCTGGCTTATCTTGATGGTCCACTTCCTCAAGAATCCGCGGTTGGAGCATTGCGGAATTTGGTGGGATCCGTCCCTGAGGAATCCTTGGTCTCCCTTGGTTTGATCCCCCGATTGGTTCACGTGTTGAAGTCAGGATCCTCGGGTGCTCAGCAAGCTGCGGTGGCCGCAATATGCCGAGTTTGCAACTCCACAGACATGAAGAAAATGGTTGGTGAAGCTGGCTGCATCCCTCTCCTTGTGAAGATGCTTGAGGCCAAGTCAAATAGTGGTAGAGAGGTTGCTGCTCAAGCAATTGCAAGCTTGATGGTTGTGTCTCAGAATAGGAGAGAAGTTAAGAAGGATGATAAAAGTGTGCCAAACTTGGTTCAGTTGCTTGATCCAAGTCCTCAGAACACTGCAAAAAAATATGCAGTCACTTGCCTTGGATCACTTTCTTCAAGTAAGAAATGTAAGAAACTAATGATCTCATATGGCGCAATTGGGTATCTGAAGAAACTTACTGAGATGGACATTCCAGGAGCTAAAAAGCTACATGAACGGTTGGAAAGAGGGAAATTAAGAAGTTTGTTTAGCAAGAAATAA 2103 0.4494 MKHKPFLGVSDSEETASGLYIVESWQSKVLGLVCDPLRHFYATTLAYPFLKDSSLTLSWLNSKVGVLFPIDQYTPRKDDILHLCDVLVGHVLVLQFCWSSHAFSKLALCDHSRFSKLLGAWLCCVSFVAANHLFRAYQTKTMVEDGDEVAVDARSTEDWLLHAQELVPIVLDKAREVKGFAGRWKMIIAKLEQIPSRLSDLSSHPCFSKNALCKEQLQAVSKTLGEAIELAELCMNEKYEGKLRMQSDLDALAGKLDLNLRDCGLLIKTGVLGEATLPLAVSSSVAESDVATHSNIRELLARLQIGHLEAKHRALDSIVEAMKEDEKNVLAALGRSNISALVQLLTATSPRIREKTVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSAVGKEKATISLQRLSMSAETARAIVGHGGVRPLVELCQTGDSVSQAAAACTLKNISAVPEVRQTLAEEGIVRIMINLLNCGILLGSKEHAAECLQNLTASNENLRRSVISEGGVRSLLAYLDGPLPQESAVGALRNLVGSVPEESLVSLGLIPRLVHVLKSGSSGAQQAAVAAICRVCNSTDMKKMVGEAGCIPLLVKMLEAKSNSGREVAAQAIASLMVVSQNRREVKKDDKSVPNLVQLLDPSPQNTAKKYAVTCLGSLSSSKKCKKLMISYGAIGYLKKLTEMDIPGAKKLHERLERGKLRSLFSKK 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01013 700 Gene3D - 470 535 IPR011989 -
Spst1g01013 700 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 152 698 - -
Spst1g01013 700 Pfam Armadillo/beta-catenin-like repeat 571 608 IPR000225 GO:0005515
Spst1g01013 700 Pfam Armadillo/beta-catenin-like repeat 411 447 IPR000225 GO:0005515
Spst1g01013 700 Gene3D - 286 469 IPR011989 -
Spst1g01013 700 Gene3D - 536 680 IPR011989 -
Spst1g01013 700 SMART arm_5 611 653 IPR000225 GO:0005515
Spst1g01013 700 SMART arm_5 570 610 IPR000225 GO:0005515
Spst1g01013 700 SMART arm_5 530 569 IPR000225 GO:0005515
Spst1g01013 700 SMART arm_5 448 489 IPR000225 GO:0005515
Spst1g01013 700 SMART arm_5 490 529 IPR000225 GO:0005515
Spst1g01013 700 SMART arm_5 407 447 IPR000225 GO:0005515
Spst1g01013 700 SMART arm_5 325 365 IPR000225 GO:0005515
Spst1g01013 700 SUPERFAMILY ARM repeat 296 677 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01013 Spst-Chr1 12493290 12496508 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01013 540 683 U-box Gene Family AT3G54790 29.167 1.09e-06 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01013 - - gmx:100781453 994.956
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g01013 1 12493290 12496508 Spst1g01013 1 12493290 12496508 ECH