Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01004 ATGACACCAGAATTTCAACAAACATTCTTCTCTGATGCTGGAACTTACATTTCATGCAATGATAAAGTGAATATAACTGTAGTTGTTGAGACTGCAGATACATTGGGTGGAGTTAGAGTTTCTAGGCCGAACTCAGATATTTACCGTGACTTCTTTTCTTATCCATCTTTTCGGCAAGAGTTCTTAGAGACGTTCCTTGCTAAAGCAGGTTTATCACCATCTTTTTTGAACTCCCATGATTGTGACATGATAGCGAATTTGTCTAGAATGTTACGTGACTCAATATTGCAGCATTCTGGGGTTGAAAGAGATTATTTCTATGTGTTTGCTGCATTATTCAAGGGCAGTTATTTTTACAATGTGGTGAACACTACCGGTTTGCTTGACGATGAAACTGTTCAATCAAGAGAGTTCGTGCAAAACATGGCTTATGAAGGTGGAGAACAGTCTTTACCTGCGGGAGCCACAACGCTTCAAAAGTTAAGGATTGAAGATGAAAGAGGTAGTTGTTTCATATGTCACGAAGAGTTCAATTGTGGTGATAATGGATCAAGGTTACCTTGTTCTCATATCTGTCATTACGATTGCATTATACAATGGTTTGTGCATAATGGTACGTGTCCATTGTGTCGTTTCACGTGCACTCGTCATTCTTGA 657 0.3896 MTPEFQQTFFSDAGTYISCNDKVNITVVVETADTLGGVRVSRPNSDIYRDFFSYPSFRQEFLETFLAKAGLSPSFLNSHDCDMIANLSRMLRDSILQHSGVERDYFYVFAALFKGSYFYNVVNTTGLLDDETVQSREFVQNMAYEGGEQSLPAGATTLQKLRIEDERGSCFICHEEFNCGDNGSRLPCSHICHYDCIIQWFVHNGTCPLCRFTCTRHS 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01004 218 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 137 212 - -
Spst1g01004 218 ProSiteProfiles Zinc finger RING-type profile. 170 211 IPR001841 -
Spst1g01004 218 Pfam Ring finger domain 169 211 IPR001841 -
Spst1g01004 218 SUPERFAMILY RING/U-box 163 215 - -
Spst1g01004 218 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 132 215 IPR013083 -
Spst1g01004 218 SMART ring_2 170 210 IPR001841 -
Spst1g01004 218 CDD RING-H2_PA-TM-RING 169 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01004 Spst-Chr1 12277670 12278326 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01004 170 212 C3H Transcription Factor Family AT3G60080 53.488 1.34e-11 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01004 - K11982 aprc:113862471 164.851