Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00997 ATGCAAAACTCAACCGAATCTTCTCCAGCTTCCCCTACGCCGTTACTCCCGCGGAGAAGCCGCGTCACCCGCCATGCGCCGTTGCGGACGGCGGCGTGGTTCTTCCGGCGAGCGAGCGGGCGGCGCCTGATGCTGGGGGAGGCGTCGGTGCGTGTGAGGGAGGCTGCTGCGGCGGAGGTGGAGGGGCGGCAGAGCGAGTGGGCGTACTCGCGGCCGGTGGTGGCGGTGGACGTGCTGTGGAACGCGGCGTTTCTGGTTATTGGCGCGTCGGTGCTGTGGCTGGGCGCGGCGGAGAAGCCGAGCGTGCCGCTGAGGACGTGGATTGTGGGGTATTTGGTACAGGGCATGGTCCATTCTCTCTGCGTCCTCGTTGAGTTCAGAAGGAGAAGGATGAGTGGGGCCCACTTGCGTTCCAATGTGCCCAACCATTTTCAATGGAGCTTTACTTCCGAGAGTGACCAAGAGTTTTATGCTTCTGAACAGTTTCTCGAGGGTGATGAAAACAGCATCATAAAATACATAGAATCGGCAAATACCATGCTTTCATTCATATGGTGGACTGTTGGGCTCTACTGGGTAACTCTTGGTGGCCAGAGTTTGACAACGGATGCACCGCAGCTTTACTGGGTCTGTATTGCATTTCTTTCTTTCGACGTTTTGATTGTACTGATCTGTGTTGCTGTCGCATGCCTTATTGGTATTGCTGTTTGCTGTTGTCTACCATGCATCCTTGCTCTCCTGTATGCAGTGGCAGATCAGGAAGGAGCAACGAAGGAAGAGATTGAGCAGTTGCCAAAATATAAGTTCAGAATAATAAAAGGTGATATTGAAGAATCTTCAAGAGGAATAATGACCGAATTTGAGAGTGAGACAGCGACCGAACATGTTGTTGCCTTAGAAGATGCAGAATGCTGTATCTGCCTTTCTCCCTATGATGATGGTGCTGAGCTCAGAGAACTTCCTTGCAACCACCATTTTCACTGCACATGCATAGACAAATGGCTGCTAATCAATGCTACATGTCCTCTCTGCAAGCTTGACATTTTGGTTGGTAACCATCAAGAAGTTTGA 1071 0.5191 MQNSTESSPASPTPLLPRRSRVTRHAPLRTAAWFFRRASGRRLMLGEASVRVREAAAAEVEGRQSEWAYSRPVVAVDVLWNAAFLVIGASVLWLGAAEKPSVPLRTWIVGYLVQGMVHSLCVLVEFRRRRMSGAHLRSNVPNHFQWSFTSESDQEFYASEQFLEGDENSIIKYIESANTMLSFIWWTVGLYWVTLGGQSLTTDAPQLYWVCIAFLSFDVLIVLICVAVACLIGIAVCCCLPCILALLYAVADQEGATKEEIEQLPKYKFRIIKGDIEESSRGIMTEFESETATEHVVALEDAECCICLSPYDDGAELRELPCNHHFHCTCIDKWLLINATCPLCKLDILVGNHQEV 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00997 356 Pfam Ring finger domain 303 345 IPR001841 -
Spst1g00997 356 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 280 349 IPR013083 -
Spst1g00997 356 ProSiteProfiles Zinc finger RING-type profile. 304 345 IPR001841 -
Spst1g00997 356 PANTHER TARGET OF ERK KINASE MPK-1 44 348 - -
Spst1g00997 356 SMART ring_2 304 344 IPR001841 -
Spst1g00997 356 SUPERFAMILY RING/U-box 292 349 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00997 Spst-Chr1 12216576 12221083 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00997 7 355 C3H Transcription Factor Family AT1G68070 48.747 2.06e-112 329
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00997 - - gmx:100795425 553.903
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g00997 1 12216576 12221083 Spst1g00997 1 12216576 12221083 ECH