Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00992 ATGCCTCGTGGGACGCTTGAAGTTATATTAATAAGCGCAAAAAAGCTTCATAACAGTGATTTTTTCGGTGCAGGATCTGAACCCCGTTGGAATGAAAGCTTTCTGTTCACTGTTTCTGGCAGTGTCTCTGAACTTAATCTGAGGCTAATGGACAAGGATACGTTTACTAGTGATGATTTCCTTGGCGAGACAAAAATTAATCTGGAACCAGTGTTAGCTGTGGGGAGCATTCCAGAAACTTGTTACAACGTTGTGAAGGACCAAAACTACTGTGGGGAGATTAAGGTGGCACTCATCTTCAATCCTGAGTGGTGA 315 0.4286 MPRGTLEVILISAKKLHNSDFFGAGSEPRWNESFLFTVSGSVSELNLRLMDKDTFTSDDFLGETKINLEPVLAVGSIPETCYNVVKDQNYCGEIKVALIFNPEW 104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00992 104 SMART C2_3c 5 80 IPR000008 -
Spst1g00992 104 Gene3D C2 domain 23 103 IPR035892 -
Spst1g00992 104 Pfam C2 domain 27 72 IPR000008 -
Spst1g00992 104 PANTHER C2 DOMAIN-CONTAINING 1 101 - -
Spst1g00992 104 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 1 102 IPR035892 -
Spst1g00992 104 ProSiteProfiles C2 domain profile. 1 81 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00992 Spst-Chr1 12168372 12169836 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00992 8 72 C2H2 Transcription Factor Family AT4G21160 29.231 5.45e-08 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00992 - - gmx:100814819 167.162