LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Spst1g00989	ATGGTTATTTCCATGCCCCAGTTTCACTTTTCCCTCTTCGTATCCTCCATCTTGCAAGATTTTCTGGAGAAGGCTGAATTTTGGTGGAAACCTCTCGTACAAGAAAACATATTGTTCTATTTGGTTAGGAATCCTTTGAGATACCTTACTGTTGCTGTTTCGCACATCAGAGGTTTAGAGATGGTGAGAGGAAAGACTCAGATGAGGCGCATAGAGAACGCCACTAGCAGGCAAGTTACCTTCTCAAAGCGTCGCAATGGGTTGCTGAAGAAGGCCTTTGAACTTTCTGTTCTTTGTGATGCTGAGGTTGCTCTTATCATTTTCTCTCCAAGAGGAAAGCTTTATGAGTTTGCAAGCTCCAGGTATATGTATGCGTTTTTGCTTCGGTTTTTACTCAAGATCTTCATCACAATCATGGAAGTAGGTGGATATGAGATACGGGCAAAGGAGCTATTTGATTGTATAATGCTAACCTTAGAAGTACAGTGGGGTTTGGATAGCACCTATGGAGTTTTAGTTGAGGCTTTTTATTTGATGAAACTTCTCATGAACAGCATGCAGGACACCATTGAACGCTACCGCAGGCATAACAGAAGTGCTCAAACAGTGAACAGATCTGATGAACAGAATATGCAGCATTTGAAGCAAGAAACAGCAAACTTGATGAAGAAGATTGAGCTACTTGAAGCTTCAAAACGGAAGCTATTGGGAGAAGGTTTGGGTTCATGCTCCTTAGAAGAACTGCAACAGATAGAACAACAGTTGGAAAGGAGTGTAAGCAATGTTCGTGCAAGAAAGAATCAGGTTTACAAGGATCAAATTGAGCAACTAAAAGAAAAGGAAAGAACCCTATATGCTGAAAATACCAGGCTGTGTGAGCAGTATGGTATGCAGCCACAGGCAGGAACTAAGGATGTGAGAGAAAATCAACCTTATGCAGAAAGCAGTCCAAGTTCAGAAGTGGAGACTGAATTGTTCATTGGACTACCTAGGTCTAGTTGA	1002	0.4162	MVISMPQFHFSLFVSSILQDFLEKAEFWWKPLVQENILFYLVRNPLRYLTVAVSHIRGLEMVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFASSRYMYAFLLRFLLKIFITIMEVGGYEIRAKELFDCIMLTLEVQWGLDSTYGVLVEAFYLMKLLMNSMQDTIERYRRHNRSAQTVNRSDEQNMQHLKQETANLMKKIELLEASKRKLLGEGLGSCSLEELQQIEQQLERSVSNVRARKNQVYKDQIEQLKEKERTLYAENTRLCEQYGMQPQAGTKDVRENQPYAESSPSSEVETELFIGLPRSS	333

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Spst1g00989	333	Coils	Coil	245	294	-	-
	Spst1g00989	333	PRINTS	MADS domain signature	63	83	IPR002100	GO:0003677\|GO:0046983
	Spst1g00989	333	PRINTS	MADS domain signature	83	98	IPR002100	GO:0003677\|GO:0046983
	Spst1g00989	333	PRINTS	MADS domain signature	98	119	IPR002100	GO:0003677\|GO:0046983
	Spst1g00989	333	MobiDBLite	consensus disorder prediction	303	322	-	-
	Spst1g00989	333	PANTHER	SERUM RESPONSE FACTOR HOMOLOG	63	300	-	-
	Spst1g00989	333	Coils	Coil	197	231	-	-
	Spst1g00989	333	Pfam	K-box region	207	294	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Spst1g00989	333	SMART	madsneu2	61	120	IPR002100	GO:0003677\|GO:0046983
	Spst1g00989	333	ProSiteProfiles	K-box domain profile.	211	301	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Spst1g00989	333	ProSitePatterns	MADS-box domain signature.	63	117	IPR002100	GO:0003677\|GO:0046983
	Spst1g00989	333	Gene3D	-	73	133	IPR036879	GO:0003677\|GO:0046983
	Spst1g00989	333	FunFam	MADS-box transcription factor MADS-MC	73	135	-	-
	Spst1g00989	333	CDD	MADS_MEF2_like	63	131	IPR033896	GO:0000977\|GO:0045944
	Spst1g00989	333	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	70	117	IPR002100	GO:0003677\|GO:0046983
	Spst1g00989	333	ProSiteProfiles	MADS-box domain profile.	61	121	IPR002100	GO:0003677\|GO:0046983
	Spst1g00989	333	MobiDBLite	consensus disorder prediction	296	333	-	-
	Spst1g00989	333	SUPERFAMILY	SRF-like	63	131	IPR036879	GO:0003677\|GO:0046983

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Spst1g00989	Spst-Chr1	12099529	12118332	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Spst1g00989	61	332	MADS-box Gene Family	AT4G22950	45.324	1.86e-58	186

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-MIKC	Spst1g00989		K-box	2e-27	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Spst1g00989	-		-	pvu:PHAVU_008G073800g	267.314

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Spst1g00989	1	12099529	12118332	Spst4g01725	4	57206847	57212606	PCT