Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00971 ATGAGTTTCTTGCAGGGAATCATTGATTCCTTTAACTCCATCTTCCCCGATAGCAATTACAACAACACGAATTCTCCACCTTCTTCAACGGATCGAATGGAAGCTTCTCCTCCTTCCGTTTCGAACGAGCGCGTAGCTTACAAGCTCAAAGGCTACTTCGATTTGGCGACGCAGGAGATCGCAAAAGCCGTTAAGGCTGAGGAATGGGGTTTGATCGACGACGCGCTTCTCCACTACAGGAACGCGCAATCGATCCTCCTCGAAGCTAGTTCAACACCGGTTCCTTCCTACATCACTTCTAGTGAAAAGCAGAAGGTGCAATCGTTTCGCGAGAAAATATCCAAATGGCAGAGTCAAGTTTCTGAGAGATTGCAGACTCTGACTAGACGAGCTGGTAGCTCATCTGCCAATCAGAGCACTGCTGCAGCACCAATTAAGCCATTGGGTACTAGAAAAAATGTGTTACAAAAGCCCTCTCAGGCAGGTCAGGTGAATAAAGTTGGAAGCCCAAAATCGAGTCGAGCATCTGGTGTAAATTATGATAACAAACTTGTTGAAATGATTAACACTGCCATAGTAGATAGAAGTCCTTCTGTTAAATGGGAAGATGTTGCTGGGCTTGAAAAGGCAAAGCAAGCATTAATGGAGATGGTTATTTTGCCAACTAAGAGAAGAGACTTGTTTACGGGTCTTCGAAGGCCAGCCAGAGGCTTGCTTCTCTTTGGTCCACCTGGTAATGGAAAAACTATGCTTGCCAAAGCAGTGGCGTCAGAATCACAAGCAACATTTTTTAATGTCACAGCAGCTTCCTTGACATCAAAATGGGTGGGTGAAGGTGAAAAGCTTGTCCGGACACTATTCATGGTAGCTATATCAAGACAGCCATCTGTAATTTTCATTGATGAGATTGATAGTATAATGTCAACAAGGTTGGCAAATGAAAATGATGCCAGCAGACGATTAAAATCTGAATTTCTTATCCAGTTTGATGGGGTGACCTCAAATCCTGATGATATTGTGATTGTAATTGGTGCGACAAATAAGCCGCAAGAATTGGATGATGCAGTTCTTAGGAGACTGGTAAAGAGAATATACGTACCTTTACCAGATGAAAATGTTCGAAAACTTCTGCTAAAACACAAGCTCAAGGGTCAAGCATTCTCCTTACCTAGTAGAGATCTAGAGAGGCTTGTAAAAGAGACAGAAGGATATTCTGGTAGTGATCTGCAAGCCTTGTGTGAAGAAGCTGCAATGATGCCAATTAGAGAGTTGGGTCCTGGGATTCTTACTGTAAGAGGACTGAGGCACGAGGATTTTAAGAAGGCAATGGCTATCATCAGACCAAGCTTAAACAAAAGTAAGTGGGAAGAGCTTGAGCGCTGGAATGAGGAATTTGGCTCTAATTGA 1407 0.4335 MSFLQGIIDSFNSIFPDSNYNNTNSPPSSTDRMEASPPSVSNERVAYKLKGYFDLATQEIAKAVKAEEWGLIDDALLHYRNAQSILLEASSTPVPSYITSSEKQKVQSFREKISKWQSQVSERLQTLTRRAGSSSANQSTAAAPIKPLGTRKNVLQKPSQAGQVNKVGSPKSSRASGVNYDNKLVEMINTAIVDRSPSVKWEDVAGLEKAKQALMEMVILPTKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVTAASLTSKWVGEGEKLVRTLFMVAISRQPSVIFIDEIDSIMSTRLANENDASRRLKSEFLIQFDGVTSNPDDIVIVIGATNKPQELDDAVLRRLVKRIYVPLPDENVRKLLLKHKLKGQAFSLPSRDLERLVKETEGYSGSDLQALCEEAAMMPIRELGPGILTVRGLRHEDFKKAMAIIRPSLNKSKWEELERWNEEFGSN 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00971 468 Gene3D - 197 462 IPR027417 -
Spst1g00971 468 CDD MIT_spastin 49 127 - -
Spst1g00971 468 SMART AAA_5 234 370 IPR003593 GO:0016887
Spst1g00971 468 MobiDBLite consensus disorder prediction 127 176 - -
Spst1g00971 468 MobiDBLite consensus disorder prediction 127 144 - -
Spst1g00971 468 Pfam ATPase family associated with various cellular activities (AAA) 238 368 IPR003959 GO:0005524|GO:0016887
Spst1g00971 468 FunFam Spastin, putative 197 381 - -
Spst1g00971 468 MobiDBLite consensus disorder prediction 153 176 - -
Spst1g00971 468 PANTHER AAA DOMAIN-CONTAINING 99 467 - -
Spst1g00971 468 MobiDBLite consensus disorder prediction 18 37 - -
Spst1g00971 468 Pfam AAA+ lid domain 393 427 IPR041569 -
Spst1g00971 468 MobiDBLite consensus disorder prediction 18 39 - -
Spst1g00971 468 FunFam AAA-type ATPase family protein 42 131 - -
Spst1g00971 468 ProSitePatterns AAA-protein family signature. 340 359 IPR003960 GO:0005524|GO:0016887
Spst1g00971 468 CDD RecA-like_spastin 203 366 - -
Spst1g00971 468 SMART smart 49 126 IPR007330 -
Spst1g00971 468 Gene3D - 41 131 - -
Spst1g00971 468 Gene3D - 369 446 - -
Spst1g00971 468 FunFam AAA-type ATPase family protein 369 446 - -
Spst1g00971 468 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 197 465 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00971 Spst-Chr1 11911609 11918472 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00971 197 449 Calmodulin-binding Proteins AT3G56690 40.840 2.98e-48 176
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00971 K13254 - gmx:100786789 818.15