Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00968 ATGGCGACTAATCTTGGTGCAACAAAGTCCACGACGACGTCGACTCAGGATAAACGACACCTCTCCATCTTCGATGTTCCGTCAAACTTCTTCGACGCTGCTCGCCTTATCCCTCCCCCTCACTCTTCCGTTTCCGATCACCACAGTGTAGGCCAATCCCAAACCCTTGAACCCTCCTCAAATGACGTCGTAACTGTCGATGATTCTCACAACGCTGATTCCGCACCTAGGTTGACCTGCAATACCTGCAGGACTCTATTCGATTCCCTCCAAGACCAGCGTGCTCATTTCAAATCCGACATTCATCGCTTCAACGTGAAGCTGACAATTGCGGGAAAAAATATTGTGAAGGAAGAAGATTTTGAGGTGCTGACATCTGAATTTGTCAAAGACTATGATGTGTCAAGTATATCGGGATCAGAAAGTGATGATAGTGAAACTGAGTCTCAGAGTCAAATTGTGCTGCATGACAAGTCGAGTGATAAACAGAAACTATTCTTCCGTCTTCAGACAGGGCAGAGAGTTTCTGTCTGGAAGTGCTTGATTATGAATGTGACTGAAAATGTATTGTATGATAATGAAAATGCAAAGAATGAAGCTGTTCAGAAGTTGAAATCTCTGACTGCTGAGCCCAGAGACAATACCCATTTGAGGATAGTTCTACTTGCATCTGGTGGACATTTTGCAGGTTGTGTCTTTGATGGTGATGCTGTTGTGGCTCACAAGACATTTCACAGATATGTTGTAAGGGCCAAGGCAGGGAAAAAACAATCATCTAAAGATGCGTCTGGCAGGGCTGTACATTCTGCCGGGGCTTCACTTCGTCGATATAATGAACTTGCATTAAAGAAGGAAGTGCATGAACTGCTTACTGCTTGGAAACCTTATTTTGATGCTTCCAATTGCATATTTATACATGCACCTTCAAGTAGTCGTCAACTGCTTTATGATGGAGAAAGATCATATTTCGGCAATTCGCAGTGTGATATTAGAAACATTGCTTTGAGTGTTCGGAGGCCTACTTTCAGGGAAGCAAAGCGTGTATATAGCCAGTTGACTCACGTAACCTATGAAGCTGATGAGAAGGAAATTTTACAAAGCAACCAAGAGGATTTGGTATCAGTTAACATTTCTAAAATAAACGGCAGTCCAACCTCCAGCAAAGGGAACAGGGCTGAGTTGGATGACAAAGATAAATCTGAAGCTTGTTCAGGTAAACAAAATGATGAACTCTCCATTTCAAGTAATGGAGAAAGTGAGAATGAGTTATCTGGTAAATCAACTCCTTTACATGAAGCAGCCCAATCGGGTGACTTTGTAAAGGTTTTGGAGCTCCTGGAACAGGGCCTAGATCCTTGCTCCAAAGATGAAAGGGGGCGGACCCCATATATGTTGGCACATGACAAAGAAGTGAGGAATACTTTCAGAAGGTTTATGGCATCAAATCTTGACAAATGGGATTGGCATGCTGCAAAAGTGCCCAGTGCATTGACCAAAGAAATGGAAGAATCACAAGCTGCCAAGCAGGCGGAAAAAGATGCTAAGAGGAAAGCAAGAGCAAAAGAATTAAAGAAATTGCGTAAAGCAAAAGAAAAGAAGGCTCAGGTTGAAGCCAGCTTGCCTAAAAATGATTCCAAAACTATAGAGAAGCAAGTAACTTCTTCAACATCGATTAAGGGACAATCTCAACTAAAAAGTGGCGTGCAAGTATCCAAAGAGGACCAAATAAGAATGGCACAGGCTGCTGAAAGAGAAAAGCGAGCAGCTGCTGCTGAAAGGAGAATAGCTGCCCTCAAAATTCAAGCTAACAGTGCAACCACTGCACCTAGCATGTCAGAGCCTAAAATTGGATTGGCCGGTGACATTTACTGTTCCTGCTGTAATTCATCACTTGCTGGTAAAGTTCCCTTCCACCGGTATAATTACAAATACTGCAGCACATCATGCATGCATGTACACAAGGAGATCCTAGATGATCAATGA 1983 0.4297 MATNLGATKSTTTSTQDKRHLSIFDVPSNFFDAARLIPPPHSSVSDHHSVGQSQTLEPSSNDVVTVDDSHNADSAPRLTCNTCRTLFDSLQDQRAHFKSDIHRFNVKLTIAGKNIVKEEDFEVLTSEFVKDYDVSSISGSESDDSETESQSQIVLHDKSSDKQKLFFRLQTGQRVSVWKCLIMNVTENVLYDNENAKNEAVQKLKSLTAEPRDNTHLRIVLLASGGHFAGCVFDGDAVVAHKTFHRYVVRAKAGKKQSSKDASGRAVHSAGASLRRYNELALKKEVHELLTAWKPYFDASNCIFIHAPSSSRQLLYDGERSYFGNSQCDIRNIALSVRRPTFREAKRVYSQLTHVTYEADEKEILQSNQEDLVSVNISKINGSPTSSKGNRAELDDKDKSEACSGKQNDELSISSNGESENELSGKSTPLHEAAQSGDFVKVLELLEQGLDPCSKDERGRTPYMLAHDKEVRNTFRRFMASNLDKWDWHAAKVPSALTKEMEESQAAKQAEKDAKRKARAKELKKLRKAKEKKAQVEASLPKNDSKTIEKQVTSSTSIKGQSQLKSGVQVSKEDQIRMAQAAEREKRAAAAERRIAALKIQANSATTAPSMSEPKIGLAGDIYCSCCNSSLAGKVPFHRYNYKYCSTSCMHVHKEILDDQ 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00968 660 MobiDBLite consensus disorder prediction 406 429 - -
Spst1g00968 660 MobiDBLite consensus disorder prediction 377 429 - -
Spst1g00968 660 Pfam Bacteroidetes VLRF1 release factor 219 357 IPR041175 -
Spst1g00968 660 MobiDBLite consensus disorder prediction 45 64 - -
Spst1g00968 660 MobiDBLite consensus disorder prediction 390 405 - -
Spst1g00968 660 ProSiteProfiles Ankyrin repeat profile. 425 457 IPR002110 GO:0005515
Spst1g00968 660 MobiDBLite consensus disorder prediction 540 570 - -
Spst1g00968 660 Pfam Vms1-associating treble clef domain 623 655 IPR041540 -
Spst1g00968 660 SUPERFAMILY Ankyrin repeat 427 480 IPR036770 -
Spst1g00968 660 Coils Coil 572 608 - -
Spst1g00968 660 PANTHER ANKYRIN REPEAT AND ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 14 659 IPR047139 -
Spst1g00968 660 MobiDBLite consensus disorder prediction 135 154 - -
Spst1g00968 660 ProSitePatterns Zinc finger C2H2 type domain signature. 80 102 IPR013087 -
Spst1g00968 660 Gene3D - 374 493 IPR036770 -
Spst1g00968 660 MobiDBLite consensus disorder prediction 37 64 - -
Spst1g00968 660 Coils Coil 501 539 - -
Spst1g00968 660 MobiDBLite consensus disorder prediction 525 573 - -
Spst1g00968 660 MobiDBLite consensus disorder prediction 135 156 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00968 18 607 C2H2 Transcription Factor Family AT1G01930 51.895 0.0 580
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00968 K26089 - gmx:100527709 1031.55