Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00957 ATGAGTGGTGGTAGCGGCAGTGGTGGTAGTGGTAACAATACTGGTAGTGGTAGCCCTTGTGGGGCTTGCAAGTTTCTTAGAAGGAAATGTGTTCCGGGTTGTATCTTTGCTCCGTATTTTGATGCAGAGCAAGGTACAACCCATTTTGCGGCGGTCCATAAGGTTTTTGGGGCTAGCAATGTGTCCAAGCTTCTACTTAACATTCCTATGCATAAGAGGCTTGATGCAGTCATCACCATTTGTTATGAAGCACAGTCACGCCTCAGAGATCCTGTTTATGGCTGTGTTTCACACATTTTTGCCCTTCAGCAACAGGTTTTGGGGAGATGGTCGGTGGTGAGCTTACAAGCAGAACTCTCATACCTTCAAGGCCACCTTGCTCAAATGGAGTTACCCCAACCACCACCTGCTCCGACGCAAACGGTGGCGGCGGCGGCGGCACCACCAGGTTTCTCAATGGCAGACTTACCAGCGGCCACTGCAGCGGCGGTGCCGGCCACCACCTATGATCTGTCTTCACTTTTTGATCCAACGGGGCAAGGTTCATGGGCCATGCAACATAGGGCAATTGACCCACGTCAATACGTGGGTGCTCCTCCATCAACTTCTACGAGTGCTGATGTTCGAGCAGTGGCACGTGACCTTCCTAATCGACATGGCTCTCCTCCATCACCCCCTGCATCAAGCTCCAATGCTTCACCATCTCTATCCCTTTCTAAATGA 723 0.5131 MSGGSGSGGSGNNTGSGSPCGACKFLRRKCVPGCIFAPYFDAEQGTTHFAAVHKVFGASNVSKLLLNIPMHKRLDAVITICYEAQSRLRDPVYGCVSHIFALQQQVLGRWSVVSLQAELSYLQGHLAQMELPQPPPAPTQTVAAAAAPPGFSMADLPAATAAAVPATTYDLSSLFDPTGQGSWAMQHRAIDPRQYVGAPPSTSTSADVRAVARDLPNRHGSPPSPPASSSNASPSLSLSK 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00957 240 PANTHER LOB DOMAIN CONTAINING PROTEIN 15 140 - -
Spst1g00957 240 MobiDBLite consensus disorder prediction 194 240 - -
Spst1g00957 240 ProSiteProfiles LOB domain profile. 18 126 IPR004883 -
Spst1g00957 240 Pfam Lateral organ boundaries (LOB) domain 19 106 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00957 Spst-Chr1 11778933 11782240 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00957 22 240 AS2 family AT2G45420 55.983 1.73e-73 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Spst1g00957 LOB 3.2e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00957 K21994 - gmx:100790517 302.367
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g00957 1 11778933 11782240 Spst1g00957 1 11778933 11782240 ECH
Spst1g00957 1 11778933 11782240 Spst4g01678 4 56505214 56509103 PCT