Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00955 ATGGAAGGAAGAGAAGGGATGAGTTCTGGGGTTACAGTGATCGGGGCAGAAGCTCCATCAGTCTATCATATGGCACCAAGGAATGAAGCTCCAAGCCAGGGTGGTCCTCCTGTTTCTGAAGCACCACTTGGAGCTGTTGGTGTGTCACCGGTGAGTGTGGGGTTGGATGGAGCATCAATTAAGAAGAAAAGGGGTAGACCAAGAAAATATGGGCCAGATGGGTTGGTGAGTATGGCATTGTCACCCATGCCCATCTCATCTTCAGCCCCATTTTCAAATGAGTTTTCATCTGGGAAGCGGGGCAGAGCACGGGGGATGGAGTACAAGCTGGCGAAGAAATTTGGAATGGATCCTCTTGGTGGCTCTGATGGTACAAGCTTTATGCCTCATATCATTACTGTCAATAGTGGCGAGGACATAGCAATGAAGGTTATATCTTTTTCTCAACAAGGACCCCGTGCTATATGCATCTTATCTGCAAGTGGTGTGATTTCAAATGTCACACTTCGTCAGCCTGATTCGTCTGGGGGAACTTTGACCTACGAGGGCCGTTTTGAGATACTTTCCTTGTCTGGATCATTCATGCCTGCTGAAAACCAAGGAGCAAGAAGCAGGTCTGGAGGGATGAGTGTTTCATTGTCAAGTCCAGACGGTCGTGTTGTAGGTGGTGGAGTTGCTGGTTTACTTGTAGCTGCAGGTCCTGTGCAGGTGGTGGTGGGAAGCTTTTTGCCATGCAACCAGCAAGCTCAGAAACCAAAGAAGCCAAAGTCTGAATATGCAGCAGCTACTGTTACCCCTATCCTTGCAGTGTCATCTGCACCACCCCCTAATAATGGTGAAAAGGAGGTTGTCCTCGGTGGACACATACTGCACAACTCAGGAACAACCCTTAACTCAAACCTTGCTCCTCCCCTGGCCTTTCGCCGAGAAAACTGGGTTAACATGCACCCGATGACAGACTCGATGAAGTCGGCTACTGACATTAACATATCCTTGCCTGATAGTTAA 1008 0.4871 MEGREGMSSGVTVIGAEAPSVYHMAPRNEAPSQGGPPVSEAPLGAVGVSPVSVGLDGASIKKKRGRPRKYGPDGLVSMALSPMPISSSAPFSNEFSSGKRGRARGMEYKLAKKFGMDPLGGSDGTSFMPHIITVNSGEDIAMKVISFSQQGPRAICILSASGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFMPAENQGARSRSGGMSVSLSSPDGRVVGGGVAGLLVAAGPVQVVVGSFLPCNQQAQKPKKPKSEYAAATVTPILAVSSAPPPNNGEKEVVLGGHILHNSGTTLNSNLAPPLAFRRENWVNMHPMTDSMKSATDINISLPDS 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00955 335 FunFam AT-hook motif nuclear-localized protein 1-like 129 260 - -
Spst1g00955 335 Gene3D - 129 265 - -
Spst1g00955 335 ProSiteProfiles PPC domain profile profile. 124 265 IPR005175 -
Spst1g00955 335 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 33 295 IPR039605 GO:0003680
Spst1g00955 335 Pfam Plants and Prokaryotes Conserved (PCC) domain 129 242 IPR005175 -
Spst1g00955 335 SUPERFAMILY AF0104/ALDC/Ptd012-like 126 247 - -
Spst1g00955 335 CDD DUF296 129 219 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00955 Spst-Chr1 11746157 11749384 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00955 6 273 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 52.980 7.49e-89 269
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00955 - - gmx:100777213 528.865
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g00955 1 11746157 11749384 Spst1g00955 1 11746157 11749384 ECH
Spst1g00955 1 11746157 11749384 Spst4g01675 4 56473730 56477349 PCT