Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00947 ATGGCTGCTTGTGCTTTGTTCAGTGGTGGCACTAACATTACCGAAGATGGCAATGTTAACAACGGAAGTGGAAGTGCTACTAGTCCTCTGACAAGTGCGTCTAACTCTAGCAACATGAGCAACGAGGAACAACAACACCACCACCACCACCTACATGGCATCGTGCCACAGCCTCATTGTGAGAGAAAAATGGTGAGGAAAAGAATGGCTTCAGAGATGGACCAAGTTAACGTTCATCCCACTCCTCCACACAACTCTTCCTCCACGAGTGATTATCCTAGGTTTCCTCGTCGAAGCACCACCAACATGAACATGTCATCCTTAGAAAAAGGGTCCACCACCACAGCTACGTTAGCCGCAGATAACGTTGCTGTTCCAAATTACCCCACTGTGACGGTCACAACCAACTACTCCACTATGTTGCTACCTTCTTCCACCACCATCAATTCTTCTGGTGTTGCTCCAAACCACAGTACTCACCAACACCATCATTTCCAAGGACTTGTTGAAAGTCAAAGCCAGGGCCAGCAAAACCCTGTGCCCGCAGTGTGTGGATTCTCAGGGTTACCACTTTTTCCATCTCAAAGCCAAAGGAACCGAGACAATAACACTACCACCGCCAACATAAGAAGCAGTGGAGGAAATATTGTTGACGTGGTTGCTTCTTCTCCTTCCATGGATGAAACTTCAGCCGCAACAAGTGGTTGGATCGATGTTATGTTGAAGGATCTCATTCACAGTTCAAACAGTGTTTCAATTCCTCAACTAATCAGCAACGTGAGGGAGATTATTTACCCTTGCAACCCCAACCTCGCGACGGTTCTTGAATACAGGTTGCGTCTTCTCACCGAGTCTACCCCACAAAACAAAAGAGGCACGGAAGGGGTTCCTCTTCCTCCTTCCGTGTCCTCAGTGAAGCTCATGAATAACCGTGTGGATGGCATTGTTCCTAATTTGCACTTCACAGATGCATCAGGTGGGGCTGTGGTTGTGAATCAGCACATGTTGTCCAGTTGGGGTGTGCCTCCAATCACTCCCCACCATGATAACAACAGCACCCCTTCAGTTTCTTTGGTTACTTTGCCTTCACCGCCGCCACCACCCCATTATTCACCCCCACAAGAGAAGCAGCCTCACCCTCAAGAGGAAGATCTAGGAGCAACCAGCAGTGCTGAGGTGGCACTGACAAGAAAGAAGAAAGAAGAGTTGCGGGAACAGAAGAAGAAAGATGAGGAGGGTTTGCATCTACTCACTTTGCTGCTTCAGTGTGCAGAAGCTGTTTCAGCAGAGAAACTAGAAGACGCCAACAAGATGTTGCTAGAGATTTCCCAATTGTCAACACCCTTTGGCACATCAGCACAGCGTGTGGCCGCTTATTTTTCAGAAGCCATATCAGCAAGGTTGGTGAGTTCATGTTTGGGGATATACGCCACTTTGCCACACACTCATCAATGCCACAAGGTGGCATCGGCTTTCCAAGTGTTCAATGGTATCAGTCCTTTCGTGAAGTTCTCACACTTCACAGCAAACCAAGCTATCCAAGAAGCTTTTGAAAGGGAAGAGAGGGTGCACATCATAGATCTGGACATAATGCAAGGGTTACAGTGGCCTGGTTTGTTTCACATTCTAGCTTCAAGACCTGGTGGAGCCCCTTATGTGAGGCTCACGGGGCTTGGTACCTCCATGGAAGCACTTGAAGCCACGGGTAAACGTTTGTCTGATTTTGCAAACAAACTTGGCCTTCCCTTTGAGTTCTTTCCCGTGGCTGAGAAAGTTGGGAACCTTGACCCTGAGAGGCTCAATGTTAGCAAAACCGAAGCTGTTGCAGTTCACTGGTTGCAACATTCCCTCTATGATGTCACCGGTTCAGACACCAACACCCTGTGGCTCTTGCAGAGGCTGGCACCCAAAGTAGTGACTGTGGTAGAGCAAGACCTAAGCAACACTGGTTCATTCTTGGGGAGGTTTGTGGAGGCTATACACTACTACTCAGCATTATTTGACTCTCTTGGTTCTAGCTATGGGGAGGAGAGTGAGGAGAGGCATGTGGTGGAACAGCAGCTATTGTCTAGGGAGATTCGCAATGTGCTAGCTGTTGGGGGGCCATCAAGGACTGGAGAGCCAAAGTTTCACAACTGGAGGGAGAAGCTTCAGCAGTGTGGGTTTAGAGGTATATCTCTGGCTGGTAATGCTGCCACTCAAGCTAGTCTACTCCTTGGTATGTTCCCATCCGAGGGCTATACCTTGGTGGAGGACAATGGCATCCTTAAACTTGGTTGGAAGGACCTTTGCTTGCTCACTGCTTCAGCTTGGAGACCTCCCTTCCATAGTGGCACTGCCATTACCCATCACCACTAG 2358 0.4869 MAACALFSGGTNITEDGNVNNGSGSATSPLTSASNSSNMSNEEQQHHHHHLHGIVPQPHCERKMVRKRMASEMDQVNVHPTPPHNSSSTSDYPRFPRRSTTNMNMSSLEKGSTTTATLAADNVAVPNYPTVTVTTNYSTMLLPSSTTINSSGVAPNHSTHQHHHFQGLVESQSQGQQNPVPAVCGFSGLPLFPSQSQRNRDNNTTTANIRSSGGNIVDVVASSPSMDETSAATSGWIDVMLKDLIHSSNSVSIPQLISNVREIIYPCNPNLATVLEYRLRLLTESTPQNKRGTEGVPLPPSVSSVKLMNNRVDGIVPNLHFTDASGGAVVVNQHMLSSWGVPPITPHHDNNSTPSVSLVTLPSPPPPPHYSPPQEKQPHPQEEDLGATSSAEVALTRKKKEELREQKKKDEEGLHLLTLLLQCAEAVSAEKLEDANKMLLEISQLSTPFGTSAQRVAAYFSEAISARLVSSCLGIYATLPHTHQCHKVASAFQVFNGISPFVKFSHFTANQAIQEAFEREERVHIIDLDIMQGLQWPGLFHILASRPGGAPYVRLTGLGTSMEALEATGKRLSDFANKLGLPFEFFPVAEKVGNLDPERLNVSKTEAVAVHWLQHSLYDVTGSDTNTLWLLQRLAPKVVTVVEQDLSNTGSFLGRFVEAIHYYSALFDSLGSSYGEESEERHVVEQQLLSREIRNVLAVGGPSRTGEPKFHNWREKLQQCGFRGISLAGNAATQASLLLGMFPSEGYTLVEDNGILKLGWKDLCLLTASAWRPPFHSGTAITHHH 785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00947 785 MobiDBLite consensus disorder prediction 1 58 - -
Spst1g00947 785 MobiDBLite consensus disorder prediction 11 41 - -
Spst1g00947 785 MobiDBLite consensus disorder prediction 78 96 - -
Spst1g00947 785 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 379 767 IPR005202 -
Spst1g00947 785 MobiDBLite consensus disorder prediction 359 375 - -
Spst1g00947 785 MobiDBLite consensus disorder prediction 342 408 - -
Spst1g00947 785 Pfam GRAS domain family 417 772 IPR005202 -
Spst1g00947 785 MobiDBLite consensus disorder prediction 42 58 - -
Spst1g00947 785 MobiDBLite consensus disorder prediction 344 358 - -
Spst1g00947 785 ProSiteProfiles GRAS family profile. 407 772 IPR005202 -
Spst1g00947 785 MobiDBLite consensus disorder prediction 76 96 - -
Spst1g00947 785 MobiDBLite consensus disorder prediction 394 408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00947 Spst-Chr1 11691551 11694563 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00947 380 773 GRAS Transcription Factor Family AT3G54220 82.134 0.0 651
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Spst1g00947 GRAS 6.8e-123 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00947 - - gmx:100806779 1245.72