Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00944 ATGGGAAATTGCGGAACCAGAGAGGAATCTGCCGTAGTTTCCAACGCCCAAGTTCAGCAGCTTCACCATGCGACGTCGTTGGGCGCGAGTGCAAGGAGCCAGAATGCCGGTAGCGAGAAGAAGCAAGGTCATGGTCACGGTCACAGGCACAATCTGAGCGAGTGCGCTTCGGATCTGAGCGAAGCGTGTTCGACACCGCGCGGTAACAATAGCAACAACACGCACGTGATATCCTTCACGCTCTACGAGTTGGAGACCATAACAAAGAGCTTTCGCGGAGACTACATCCTCGGCGAGGGAGGGTTCGGCACCGTTTACAAAGGTTACATTGATGAGAACGTCAGAGTGGGACTCAAATCGCTTCCTGTAGCGGTTAAGGTTCTGAACAAGGAAGGATTACAAGGACATCGAGAGTGGCTTACGGAGGTGAATTTTCTTGGGCAGCTAAGGCATCCTAATCTAGTGAAGTTGATTGGGTACTGCTGTGAAGATGACCATAGGCTCCTTGTGTACGAGTTCATGTTCCGAGGGAGTTTGGAAAATCACTTATTCCGAAAGGCAACTGTCCCTTTATCATGGGCTACAAGAATGATGATTGCTCTTGGAGCTGCCAAAGGACTTGCATTTCTCCACAATGCTGAAAGGCCAGTGATCTACCGTGACTTCAAAACGTCTAATATATTATTGGACTCCGATTATACAGCAAAGCTTTCTGATTTTGGACTAGCTAAAGCAGGACCACAAGGTGATGAAACCCATGTATCCACTCGAGTCATGGGTACATATGGTTATGCTGCCCCTGAATATGTAATGACTGGCCACCTGACGGCTAGAAGTGACGTCTATAGCTTTGGCGTTGTTCTTTTGGAGCTCTTAACAGGAAGGAAATCCGTCGACAAGACCAGACCTGGCAAGGAACAGAGCTTGGTAGATTGGGCAAGGCCAAAGCTAAATGACAAGAGAAAGCTGCTACAAATAATTGATCCCAGATTGGAGAATCAATACTCAGTTAGGGCTGCACAAAAAGCATGTAGCTTGGCTTATTACTGTTTAAGTCAAAATCCCAAAGCGAGGCCCCTAATGAGCGATGTAGTTGAGACATTGGAACCCTTACAAAGTTCCAGTATTGGTGCAGGTGAAGTCTCATTATTATCTGGTTCAAATAATGGGAGTGCTGGGGCTTTCGCCATGAACAAAATCTCTGATTACCGTATGCGTCAAAGGTTTTCAAACAACGTTGGTCCTGGTGCTACTTGTCGATCTCCGAACCCAAATTGTTCACCAGGTGCCCCAGCAGCACTACGGGTGAGATGA 1314 0.4756 MGNCGTREESAVVSNAQVQQLHHATSLGASARSQNAGSEKKQGHGHGHRHNLSECASDLSEACSTPRGNNSNNTHVISFTLYELETITKSFRGDYILGEGGFGTVYKGYIDENVRVGLKSLPVAVKVLNKEGLQGHREWLTEVNFLGQLRHPNLVKLIGYCCEDDHRLLVYEFMFRGSLENHLFRKATVPLSWATRMMIALGAAKGLAFLHNAERPVIYRDFKTSNILLDSDYTAKLSDFGLAKAGPQGDETHVSTRVMGTYGYAAPEYVMTGHLTARSDVYSFGVVLLELLTGRKSVDKTRPGKEQSLVDWARPKLNDKRKLLQIIDPRLENQYSVRAAQKACSLAYYCLSQNPKARPLMSDVVETLEPLQSSSIGAGEVSLLSGSNNGSAGAFAMNKISDYRMRQRFSNNVGPGATCRSPNPNCSPGAPAALRVR 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00944 437 SUPERFAMILY Protein kinase-like (PK-like) 71 369 IPR011009 -
Spst1g00944 437 FunFam Probable serine/threonine-protein kinase PBL8 174 384 - -
Spst1g00944 437 ProSitePatterns Protein kinases ATP-binding region signature. 97 126 IPR017441 GO:0005524
Spst1g00944 437 Gene3D Phosphorylase Kinase; domain 1 55 173 - -
Spst1g00944 437 FunFam Serine/threonine-protein kinase BIK1 58 173 - -
Spst1g00944 437 ProSiteProfiles Protein kinase domain profile. 91 372 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst1g00944 437 CDD STKc_IRAK 97 371 - -
Spst1g00944 437 MobiDBLite consensus disorder prediction 414 437 - -
Spst1g00944 437 MobiDBLite consensus disorder prediction 27 52 - -
Spst1g00944 437 Pfam Protein tyrosine and serine/threonine kinase 96 368 IPR001245 GO:0004672|GO:0006468
Spst1g00944 437 ProSitePatterns Serine/Threonine protein kinases active-site signature. 217 229 IPR008271 GO:0004672|GO:0006468
Spst1g00944 437 Gene3D Transferase(Phosphotransferase) domain 1 174 380 - -
Spst1g00944 437 PANTHER OS01G0588500 PROTEIN-RELATED 45 372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00944 Spst-Chr1 11662191 11665458 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00944 71 381 Glycoside Hydrolase AT3G07070 52.866 2.01e-109 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Spst1g00944 PK_Tyr_Ser-Thr 6e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00944 - - gmx:102662348 838.95