Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00943 ATGCCCCCTGACCTCTGCTACCAATGCGTCCAAAACGCCACAAACAAACTAACCTCGGATCCAGAATGTTCCCTCTCCAAACAAGCCCTAATCTGGTACGACGAGTGCATGGTACGCTACTCCAACGTCTCGTTCTTCTCCACCGTCACCACCGAACCCAAAGTATGCAAATTCAACAATGCCAAAATCTCCAACAACGTAACCACCTTCAAGAACATTTTATCAAAAACCATGAAGCAAACCATACACGAAGTAGCGAACTCCCCCACTGGGAACTGGTACGCCACGAAGCAGCAAAACGTATTCGAAACTCAGACGCTGTACTCTATGGCGCAGTGCACCACGGACCTCTCCCGTCACGATTGCGTCATCATACTAATCGTTCCAGAAACGAGATATTCTTATCCACTATCAGATCCAGGATATTCTGGATACATATCTCACAACTGTAGTAGCTACGTTCAGACTCTGCAAAACGATGACGTTCTTTCGTTAAGGTCAAACCTCACCACTCTTCTATCATACTTGACTTCCAACGCCACCGCCGGCGCGGAGTTTCAGACTCGAGTAGGAGCGCTGCGCGGTCTCTTCATGTGCCGCGGTGACATCGCGACGGGCGCCGTCTGTGGCGAGTGCGTGCGGAACGCATCGGCGAGAGTGCTTTCGGCATGTCGTTTTGCGAGGGAGGGTGTGGTTTGGTTCGACTATTGTTTGGTTCGGTATTCGGATCGGGATTTTGTCTCCAGAGTGGAGACATGGCCGAGATATGAGATTCTGAATGTGACGAGTGGCGCGGCAACGATTGAGGAGACCGCGTTTACGTTTGCGACGAGCTTGGCTGGCATTGCGAACCGAACAGGGGACAGTGGCGTGAGGTACCGAAACGCGACGGTGACATTGACCGAGGAGCAGACGCTATATGTTGCGGCGCAGTGTACGCGCGACTTGTCGAGCAACGATTGCGACGCTTGCTTGAGCGATGTGATTGGATCGGCGATTCCGTGGAGGCGTTTGGGAAGCCTCGGTGGAAGAGTTCTGTATCCGAGCTGTGTTCTCAGGTTTGAAGTGTTTCAGTTTCTGAACAACTGGGTGGCACCGCCGTCGCTGCCGCTACCGCCGCCACCACCGCAGCCTGTTCGTATCCCTCATCCTACAGATTTTGGTCTTGCTAGAATTGTTGAAATAGATCAGCAAGAAGGAAGTACTAACAGGATCATTGGAACTTATGGATATATGTCTCCAGAATATGCAATGCTTGGACAATTTTCTGAGAAATCAGATGTTTACAGCTTTGGAGTTATGATTTTGGAGATTATTACTGGGAAAAAGAATGTAGGTTCCTATGAATCATATGGTGCTGTTGATGGTCTGTTAAGTTTTGTTTGGAAACAATGGATGGATCATACACCACTGAACATATTGGACTCAAAATTGATGAAGGATTATTCCAAAACAGAAGTGATTAAGTGCATTCAAATTGGTCTGTTATGTGTTCAAGAAAATCCTGATAAGAGACCTACAATGTTGACCATAATTTCATATCTTAGCAATTCGTCAGTGGAATTGCCATTTCCGCTAGAACCAGCCTTCATCTTGCATGGTAAAATGAATCGAAAAATAGTTGCCAATGAATCCAATTCCAGTCAATCTACCAACAATTCAACATCGTTCTCTGTCAATGAAATGTCTATGAGTGAATTCTATCCTCGGTAG 1713 0.4734 MPPDLCYQCVQNATNKLTSDPECSLSKQALIWYDECMVRYSNVSFFSTVTTEPKVCKFNNAKISNNVTTFKNILSKTMKQTIHEVANSPTGNWYATKQQNVFETQTLYSMAQCTTDLSRHDCVIILIVPETRYSYPLSDPGYSGYISHNCSSYVQTLQNDDVLSLRSNLTTLLSYLTSNATAGAEFQTRVGALRGLFMCRGDIATGAVCGECVRNASARVLSACRFAREGVVWFDYCLVRYSDRDFVSRVETWPRYEILNVTSGAATIEETAFTFATSLAGIANRTGDSGVRYRNATVTLTEEQTLYVAAQCTRDLSSNDCDACLSDVIGSAIPWRRLGSLGGRVLYPSCVLRFEVFQFLNNWVAPPSLPLPPPPPQPVRIPHPTDFGLARIVEIDQQEGSTNRIIGTYGYMSPEYAMLGQFSEKSDVYSFGVMILEIITGKKNVGSYESYGAVDGLLSFVWKQWMDHTPLNILDSKLMKDYSKTEVIKCIQIGLLCVQENPDKRPTMLTIISYLSNSSVELPFPLEPAFILHGKMNRKIVANESNSSQSTNNSTSFSVNEMSMSEFYPR 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00943 570 Pfam Salt stress response/antifungal 4 42 IPR002902 -
Spst1g00943 570 Pfam Salt stress response/antifungal 164 243 IPR002902 -
Spst1g00943 570 Pfam Salt stress response/antifungal 275 355 IPR002902 -
Spst1g00943 570 Gene3D - 258 359 IPR038408 -
Spst1g00943 570 Gene3D - 51 126 IPR038408 -
Spst1g00943 570 Gene3D - 1 45 IPR038408 -
Spst1g00943 570 Gene3D - 144 246 IPR038408 -
Spst1g00943 570 ProSiteProfiles Protein kinase domain profile. 175 530 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst1g00943 570 Pfam Protein tyrosine and serine/threonine kinase 385 514 IPR001245 GO:0004672|GO:0006468
Spst1g00943 570 SUPERFAMILY Protein kinase-like (PK-like) 385 538 IPR011009 -
Spst1g00943 570 Gene3D Transferase(Phosphotransferase) domain 1 379 522 - -
Spst1g00943 570 ProSiteProfiles Gnk2-homologous domain profile. 1 45 IPR002902 -
Spst1g00943 570 ProSiteProfiles Gnk2-homologous domain profile. 252 359 IPR002902 -
Spst1g00943 570 PANTHER CYSTEINE-RICH REPEAT SECRETORY PROTEIN 145 368 - -
Spst1g00943 570 ProSiteProfiles Gnk2-homologous domain profile. 145 246 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00943 Spst-Chr1 11638863 11642453 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00943 382 570 Receptor kinase-like Gene Family AT4G23150 47.895 1.96e-49 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Spst1g00943 PK_Tyr_Ser-Thr 1.7e-13 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00943 - - gmx:100806248 456.447