Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00940 ATGGCTTTGAACTCCTTGAAGCCCATCTCCCTTTGCATCCTTGTTACCTTCTTCAGTTTCGCAACTAGTAAAGCAAAGGGCGCTGACTTTCTTTATCGATTTTGCAGTGACGACAGAAGCAGTGGGAACGGCACCTATCCGATGAACCTGAGGACCCGCCTCTCTTCCTTATCTTCCAAAGCCAGCGACAAAAGATTCGACGTCGAGCCAGTGCCTGCCACAAACTCCTCTGACACGGTGTATGGTCTTTTCATGTGCAGGGGTGATGTACTCCCTCAAGCCTGCAAAGACTGCGTCGCAAACGCAACCCAGACTCTATCTTCGGACACGAACTGTTCCCTGGCCAAATGGGGTGTGATTTGGTACGAGGAGTGCATGGTACGGTACTCAAATGACTCCTTCTTCTCCACAGTGGACACATCTCCTGCTTTCTTCAAGTGGAACTTGGCCAATATCTCCTCCAACTCAACAAGCAGCTTCATGACTTCGTTGGACGCCACCATGATGGAAACTGCAAATCAAGCAGCCAAATCTAGTAACAGGTATTCCACGAGGCAGGAAAACTTGTCTGGATTTCAGACCCTTTACTGCCTAGCTCAGTATGAATTGTACCCTTTCTACCGCGTCAGTGATGCACAAATAGGACTCGTCCCTGAAACAAAATATGCACACACAGATTCTGAATATTCAGAAGATCCCGGCTATATTTCTTACAACTGCTCAAACAACAAAGCTGACGCTGCTTTCCAATCAAATCTCAGAACCCTGCTCTCTGACATGTCTTCCAACGGCACCTCTCAAAATGGATTCCAGACGCTGGAGAAAACAGCCTATGGCCTCTTCAGGTGCCGTGACGACATTACTCTTGGCCTCTGTGGACAATGCATCCAAAACGCAACTGACAAAATAGCCTCTCTGTGTGGTTTGGCTTCTACGGAGGCCGTCATATGGTACAATCACTGCTGGCTTCGCTATTCCGACAGAGACTTCTTCTCCAGCGCCGACACAAGTCCGAGATTTTGGGATCTGAATATCAGCAACACCAATCCGATACAGTCCTCCGTTGCTTCTGAATTATCCAACAAGCTAGATGAGGTGGCCACGAAGACAGGGAACAGTAATACCAAATACCAAACAGAATCACTGAGATTGAATGATAAGCAAACAGTGTATATTCTTGCCCAATGCTCATCGGGTCTATCAACCAATAGTTGCGTTGGGTGCCTTAGTGATGTGATTGGAATGGCAATTCCATGGGGCAGTTTAGGAAGTGTCGGTGGACGAGTTCTCTATCCAAGCTGTTTTCTTCGCTTTGAACTGTTCCAGTTTTACAATCTCGTTCTTACCACTGCTAATCCTCCCCCACCAGATTCTAAACCAGAGAAAGTTCTGAGTTGTGGCTACATGTCTCCAGAATATGCTATGTTTGGACAATTTTCCGAGAAATCTGATGTTTACAGTTTTGGTGTTGTGGTTCTCGAGATTATCAGTGGAAAAAAGAATACAAGTCCACATGAACCACATCGTGTTGCTGATGGTCTTCTAAATTTTGTTTGGAGACATTGGAGGGATGAAACAGCATTGAGCATATTAGACCCAAAATTAAAGGAAAAGTATGGTGGTGATGTTGAAGTGATGAGATGCATTCAAATGGGACTATTATGTGTTCAAGACAGTCCAGATGCTAGACCTACAATGCTGACAATTGTTTCATATCTTAGCAGTCACACAATTGAGTTGCCATCTCCAAGAGAACCAACATTTTTCTTACACCAGAGAATGGATCCAATTGTTACTCATGAATCAAGTTCAGGACAAGCTCCCAACAGTTCCACACCATCCTCTATCAATGAAATATCTATAAGTGGATTTTATCCTCGATAA 1884 0.4496 MALNSLKPISLCILVTFFSFATSKAKGADFLYRFCSDDRSSGNGTYPMNLRTRLSSLSSKASDKRFDVEPVPATNSSDTVYGLFMCRGDVLPQACKDCVANATQTLSSDTNCSLAKWGVIWYEECMVRYSNDSFFSTVDTSPAFFKWNLANISSNSTSSFMTSLDATMMETANQAAKSSNRYSTRQENLSGFQTLYCLAQYELYPFYRVSDAQIGLVPETKYAHTDSEYSEDPGYISYNCSNNKADAAFQSNLRTLLSDMSSNGTSQNGFQTLEKTAYGLFRCRDDITLGLCGQCIQNATDKIASLCGLASTEAVIWYNHCWLRYSDRDFFSSADTSPRFWDLNISNTNPIQSSVASELSNKLDEVATKTGNSNTKYQTESLRLNDKQTVYILAQCSSGLSTNSCVGCLSDVIGMAIPWGSLGSVGGRVLYPSCFLRFELFQFYNLVLTTANPPPPDSKPEKVLSCGYMSPEYAMFGQFSEKSDVYSFGVVVLEIISGKKNTSPHEPHRVADGLLNFVWRHWRDETALSILDPKLKEKYGGDVEVMRCIQMGLLCVQDSPDARPTMLTIVSYLSSHTIELPSPREPTFFLHQRMDPIVTHESSSGQAPNSSTPSSINEISISGFYPR 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00940 627 Gene3D Transferase(Phosphotransferase) domain 1 446 581 - -
Spst1g00940 627 ProSiteProfiles Gnk2-homologous domain profile. 231 330 IPR002902 -
Spst1g00940 627 ProSiteProfiles Gnk2-homologous domain profile. 336 443 IPR002902 -
Spst1g00940 627 SUPERFAMILY Protein kinase-like (PK-like) 463 604 IPR011009 -
Spst1g00940 627 MobiDBLite consensus disorder prediction 599 621 - -
Spst1g00940 627 Pfam Protein tyrosine and serine/threonine kinase 460 571 IPR001245 GO:0004672|GO:0006468
Spst1g00940 627 MobiDBLite consensus disorder prediction 599 627 - -
Spst1g00940 627 Gene3D - 27 134 IPR038408 -
Spst1g00940 627 Gene3D - 341 443 IPR038408 -
Spst1g00940 627 Gene3D - 234 330 IPR038408 -
Spst1g00940 627 ProSiteProfiles Gnk2-homologous domain profile. 28 134 IPR002902 -
Spst1g00940 627 PANTHER CYSTEINE-RICH REPEAT SECRETORY PROTEIN 234 454 - -
Spst1g00940 627 Pfam Salt stress response/antifungal 35 131 IPR002902 -
Spst1g00940 627 Pfam Salt stress response/antifungal 240 327 IPR002902 -
Spst1g00940 627 Pfam Salt stress response/antifungal 357 439 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00940 Spst-Chr1 11620128 11624032 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00940 463 627 Receptor kinase-like Gene Family AT4G23140 49.701 3.02e-41 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Spst1g00940 PK_Tyr_Ser-Thr 1.3e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00940 - - pvu:PHAVU_008G077500g 609.757