Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00929 ATGGGGTTTCAGATGGCTGCAAATTCTGGGAACATCTCATTTTCATCGTCTCAATCTAGTTCACAGGCCCATGGGGATACTGATTCTGTCCAGGTTGCAGTGTGTTCTCTTTGTCAAAAGGCCGTATCACATGATCATGAGATGGCAAGCGATCTTGCTAGCAGTGGTGTGTGCGGTGATTGTAAATTTTTGTTACTTGAAGAATTCGGGAATCATACAGTTACCCAAAGTTCACGAAGGAGGCTTAGAGGAAGATTCAGGCGCAACAGTTCTGAATCAACGGAGAATAGTTTCTCACAGCAGATTCCTCATGTGGTTAATACTGTGAGACAACATTACTCACCTGCTTCTGAGGAGGAGGATCAACTTGTAGATGATGACACATCTGCTTGGTCATCGCAATATGCTAGTACACAAAATACCCCTGGTGGGTCTAGAAGGTGGAGGCATGTTCTATCTGACACTGACAGTGATGGTTTTGATAATTGGACTTCTCCTTTTTATGGTGAAAGTGAATCAAGTGTGAGTTTTCGGTACAGGGTTCTCCATGGTGAGACAGATTCTTTCTCTCACAGTGCTTATGGAGGTGACTCGGATATTTCTATGGATACTCATAGTTTTTTTGGCACTGGAGTCTTTAATTTACCAGATGTGTTCGATAGTGACACTGACATTGATCCAATGCATGCTGGCCACAGCCAATGGATTTCAGATGAGGATGATGAAGAAGAGGATGAAGATGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGATGGAGAGGAGGAGGAGGAGGAAGAGGCGGAGGAGGAAGAGGAGGATAGGGAATGGGAATTAGCTGAGGCTGAGGAAGCTGAAGCGACAGCCCGCCTTCAAATTTTTTTCACATCAAGTTCAAATGAGAGCAGGGATACCTGGCAAGCTTTTGAGGATAGTGACTTACCTCATGGAGCGAACTTTGGGGATTATCTTGATGCCAGACGTTTTGAAGATCTGCTTGAGCATCTTGCTGAGAATGACAGCTCAAGAAGAGGAGCACCTCCTGCAGCTGTGTCTTTCATGAAAAATCTGCCACGTGTGGTCATTGGCAAAGAACATGAGAAGCATGGTGAACTAGTTTGTGCCATTTGCAAGGATGTCTTTGTATCCGGTGCCGAAGTAAATCAACTCCCCTGCTCTCACCTTTATCACATTGATTGCATTTTGCCATGGTTGAGCGCACGAAATTCATGCCCTCTTTGTCGTTTTGAGCTTCCAACCGATGATAAGGATTATGAAGAGGGAAAGCAGAACATTGATGGTAGAAATGTGATCCATGAGAGGCAGCAAATAGATGTAACAGATGATAGTTCCTCTGATGGAGATGAGGTGAATGACGAGAATGGTAGTAGTCAAGATGAAATACGGCATAGGGTTTTGAGCTCAGATTCTGCCGCAATTTCTTCTACAACAAGAAGTCGTAGAGGAAGATGGTTTTTTCTTGCTGCAGCTCCAATTGTTAGCTTAGTGGGCATTGTTCTTGTATTGTGGTTAGGTAATAACTCTGATATTGAAGGAAATAGAAATCTGGGCAGTCATTACTTATCCGGGCAAAATCAACATGCTGTTCATGCTTATGCCACTCCAAACCAGAGGGAGAGTAGAAGCAGAAGATGGTGGTGCCCATTTTAA 1701 0.4415 MGFQMAANSGNISFSSSQSSSQAHGDTDSVQVAVCSLCQKAVSHDHEMASDLASSGVCGDCKFLLLEEFGNHTVTQSSRRRLRGRFRRNSSESTENSFSQQIPHVVNTVRQHYSPASEEEDQLVDDDTSAWSSQYASTQNTPGGSRRWRHVLSDTDSDGFDNWTSPFYGESESSVSFRYRVLHGETDSFSHSAYGGDSDISMDTHSFFGTGVFNLPDVFDSDTDIDPMHAGHSQWISDEDDEEEDEDEEEEEEEEEEEEEEEEEEEEEDGEEEEEEEAEEEEEDREWELAEAEEAEATARLQIFFTSSSNESRDTWQAFEDSDLPHGANFGDYLDARRFEDLLEHLAENDSSRRGAPPAAVSFMKNLPRVVIGKEHEKHGELVCAICKDVFVSGAEVNQLPCSHLYHIDCILPWLSARNSCPLCRFELPTDDKDYEEGKQNIDGRNVIHERQQIDVTDDSSSDGDEVNDENGSSQDEIRHRVLSSDSAAISSTTRSRRGRWFFLAAAPIVSLVGIVLVLWLGNNSDIEGNRNLGSHYLSGQNQHAVHAYATPNQRESRSRRWWCPF 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00929 566 ProSiteProfiles Zinc finger RING-type profile. 384 425 IPR001841 -
Spst1g00929 566 SUPERFAMILY RING/U-box 364 431 - -
Spst1g00929 566 MobiDBLite consensus disorder prediction 237 290 - -
Spst1g00929 566 MobiDBLite consensus disorder prediction 80 100 - -
Spst1g00929 566 Pfam Ring finger domain 384 425 IPR001841 -
Spst1g00929 566 Coils Coil 236 298 - -
Spst1g00929 566 MobiDBLite consensus disorder prediction 115 148 - -
Spst1g00929 566 MobiDBLite consensus disorder prediction 127 146 - -
Spst1g00929 566 MobiDBLite consensus disorder prediction 224 290 - -
Spst1g00929 566 FunFam E3 ubiquitin-protein ligase RING1-like 345 431 - -
Spst1g00929 566 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 344 431 IPR013083 -
Spst1g00929 566 SMART ring_2 384 424 IPR001841 -
Spst1g00929 566 MobiDBLite consensus disorder prediction 1 25 - -
Spst1g00929 566 MobiDBLite consensus disorder prediction 451 478 - -
Spst1g00929 566 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 244 429 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00929 Spst-Chr1 11488305 11490005 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00929 17 566 C3H Transcription Factor Family AT5G01980 41.373 7.05e-107 328
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00929 - - gmx:100797923 800.816
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g00929 1 11488305 11490005 Spst1g00929 1 11488305 11490005 ECH