Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Spst1g00929 | ATGGGGTTTCAGATGGCTGCAAATTCTGGGAACATCTCATTTTCATCGTCTCAATCTAGTTCACAGGCCCATGGGGATACTGATTCTGTCCAGGTTGCAGTGTGTTCTCTTTGTCAAAAGGCCGTATCACATGATCATGAGATGGCAAGCGATCTTGCTAGCAGTGGTGTGTGCGGTGATTGTAAATTTTTGTTACTTGAAGAATTCGGGAATCATACAGTTACCCAAAGTTCACGAAGGAGGCTTAGAGGAAGATTCAGGCGCAACAGTTCTGAATCAACGGAGAATAGTTTCTCACAGCAGATTCCTCATGTGGTTAATACTGTGAGACAACATTACTCACCTGCTTCTGAGGAGGAGGATCAACTTGTAGATGATGACACATCTGCTTGGTCATCGCAATATGCTAGTACACAAAATACCCCTGGTGGGTCTAGAAGGTGGAGGCATGTTCTATCTGACACTGACAGTGATGGTTTTGATAATTGGACTTCTCCTTTTTATGGTGAAAGTGAATCAAGTGTGAGTTTTCGGTACAGGGTTCTCCATGGTGAGACAGATTCTTTCTCTCACAGTGCTTATGGAGGTGACTCGGATATTTCTATGGATACTCATAGTTTTTTTGGCACTGGAGTCTTTAATTTACCAGATGTGTTCGATAGTGACACTGACATTGATCCAATGCATGCTGGCCACAGCCAATGGATTTCAGATGAGGATGATGAAGAAGAGGATGAAGATGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGATGGAGAGGAGGAGGAGGAGGAAGAGGCGGAGGAGGAAGAGGAGGATAGGGAATGGGAATTAGCTGAGGCTGAGGAAGCTGAAGCGACAGCCCGCCTTCAAATTTTTTTCACATCAAGTTCAAATGAGAGCAGGGATACCTGGCAAGCTTTTGAGGATAGTGACTTACCTCATGGAGCGAACTTTGGGGATTATCTTGATGCCAGACGTTTTGAAGATCTGCTTGAGCATCTTGCTGAGAATGACAGCTCAAGAAGAGGAGCACCTCCTGCAGCTGTGTCTTTCATGAAAAATCTGCCACGTGTGGTCATTGGCAAAGAACATGAGAAGCATGGTGAACTAGTTTGTGCCATTTGCAAGGATGTCTTTGTATCCGGTGCCGAAGTAAATCAACTCCCCTGCTCTCACCTTTATCACATTGATTGCATTTTGCCATGGTTGAGCGCACGAAATTCATGCCCTCTTTGTCGTTTTGAGCTTCCAACCGATGATAAGGATTATGAAGAGGGAAAGCAGAACATTGATGGTAGAAATGTGATCCATGAGAGGCAGCAAATAGATGTAACAGATGATAGTTCCTCTGATGGAGATGAGGTGAATGACGAGAATGGTAGTAGTCAAGATGAAATACGGCATAGGGTTTTGAGCTCAGATTCTGCCGCAATTTCTTCTACAACAAGAAGTCGTAGAGGAAGATGGTTTTTTCTTGCTGCAGCTCCAATTGTTAGCTTAGTGGGCATTGTTCTTGTATTGTGGTTAGGTAATAACTCTGATATTGAAGGAAATAGAAATCTGGGCAGTCATTACTTATCCGGGCAAAATCAACATGCTGTTCATGCTTATGCCACTCCAAACCAGAGGGAGAGTAGAAGCAGAAGATGGTGGTGCCCATTTTAA | 1701 | 0.4415 | MGFQMAANSGNISFSSSQSSSQAHGDTDSVQVAVCSLCQKAVSHDHEMASDLASSGVCGDCKFLLLEEFGNHTVTQSSRRRLRGRFRRNSSESTENSFSQQIPHVVNTVRQHYSPASEEEDQLVDDDTSAWSSQYASTQNTPGGSRRWRHVLSDTDSDGFDNWTSPFYGESESSVSFRYRVLHGETDSFSHSAYGGDSDISMDTHSFFGTGVFNLPDVFDSDTDIDPMHAGHSQWISDEDDEEEDEDEEEEEEEEEEEEEEEEEEEEEDGEEEEEEEAEEEEEDREWELAEAEEAEATARLQIFFTSSSNESRDTWQAFEDSDLPHGANFGDYLDARRFEDLLEHLAENDSSRRGAPPAAVSFMKNLPRVVIGKEHEKHGELVCAICKDVFVSGAEVNQLPCSHLYHIDCILPWLSARNSCPLCRFELPTDDKDYEEGKQNIDGRNVIHERQQIDVTDDSSSDGDEVNDENGSSQDEIRHRVLSSDSAAISSTTRSRRGRWFFLAAAPIVSLVGIVLVLWLGNNSDIEGNRNLGSHYLSGQNQHAVHAYATPNQRESRSRRWWCPF | 566 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Spst1g00929 | 566 | ProSiteProfiles | Zinc finger RING-type profile. | 384 | 425 | IPR001841 | - | |
Spst1g00929 | 566 | SUPERFAMILY | RING/U-box | 364 | 431 | - | - | |
Spst1g00929 | 566 | MobiDBLite | consensus disorder prediction | 237 | 290 | - | - | |
Spst1g00929 | 566 | MobiDBLite | consensus disorder prediction | 80 | 100 | - | - | |
Spst1g00929 | 566 | Pfam | Ring finger domain | 384 | 425 | IPR001841 | - | |
Spst1g00929 | 566 | Coils | Coil | 236 | 298 | - | - | |
Spst1g00929 | 566 | MobiDBLite | consensus disorder prediction | 115 | 148 | - | - | |
Spst1g00929 | 566 | MobiDBLite | consensus disorder prediction | 127 | 146 | - | - | |
Spst1g00929 | 566 | MobiDBLite | consensus disorder prediction | 224 | 290 | - | - | |
Spst1g00929 | 566 | FunFam | E3 ubiquitin-protein ligase RING1-like | 345 | 431 | - | - | |
Spst1g00929 | 566 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 344 | 431 | IPR013083 | - | |
Spst1g00929 | 566 | SMART | ring_2 | 384 | 424 | IPR001841 | - | |
Spst1g00929 | 566 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
Spst1g00929 | 566 | MobiDBLite | consensus disorder prediction | 451 | 478 | - | - | |
Spst1g00929 | 566 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE PRAJA | 244 | 429 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Spst1g00929 | Spst-Chr1 | 11488305 | 11490005 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Spst1g00929 | 17 | 566 | C3H Transcription Factor Family | AT5G01980 | 41.373 | 7.05e-107 | 328 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Spst1g00929 | - | - | gmx:100797923 | 800.816 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Spst1g00929 | 1 | 11488305 | 11490005 | Spst1g00929 | 1 | 11488305 | 11490005 | ECH |