Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00926 ATGGAACCCAACAACGCTGACGTTTTCCGACCTTCCTCTTCTCCCTCCTCGTCCCCCAACGCAAGACGGATTTCCGGGATTTTGTCACCGTCTAATATCATTCAGGCTCCTTTATCGGCACTATTGGAATATTCCGGCATCCTTCCGTCGCGCTCCTCCAACCACCACAGCCAGCCCGCTCCCGACGCCGTTAATAATGACGACGAGGTTTCGATTAGGATAATCGGCCCCGCGGAGCAGGAGCAGCACCCCCGGGAGGAACAGCAGAGCCCGCCTCCTGCTGCGGGATTGGTCATCGGACTCGCGCATTCGCAAAACGATGCCGTGTTGCCGTCCGCGTCGCCTCGTGGAGACGCTGAGGAAAACGCGGTCTCCTCTGGGGACGGCGTTGGGAGAGATTCGTCTTACCAGAGGTACGACATTCAGCATGCTGCCAGGTGGATTGAGCAGGTCTTGCCGTTTTCGTTGCTTCTCTTGGTAGTTTTCATAAGGCAGCATTTGCAAGGGTTTTTTGTGACAATTTGGATTGCGGCTGTGCTTTTCAAGTCCAATGATATTCTGAGGAAACAGACTGCGTTGAAGGGAGAGAGGAAAATACCGGTTTTGATTGGGATTTCTGTTGGGTTCGCGCTTCATGTGGTTGGTGTTTATTGGTGGTATCAAAATGATGATCTCATGTATCCCTTGATCATGCTTCCGCCCAAGGATATACCGCCTTTTTGGCATGCAATTTTCATCATCATGGTCAATGATACTTTGGTCCGCCAAGCTGCAATGGTATTCAAGTGTATATTGTTGATGTATTACAAGAATAGCAGAGGCCGAAGTTACCGTAAGCAGGGTCAGATGCTGACTTTAGTTGAATATCTACTTCTGCTTTACCGTGCCTTGTTGCCAACTCCAGTTTGGTATCGTTTCTTCCTGAACAAAGAATATGGAAGCCTCTTTTCTTCACTGATGACAGGATTGTATCTAACATTTAAACTCACGTCTGTTGTTGAAAAGGTGCAATCCTTCTTTGCTTCAGTGAAGGCGTTGTCACGTAAAGAAATGCACTATGGGGCTTATGCAACATCAGAGCAGGTCAATGCAGCCGGTGATCTTTGTGCTATTTGTCAGGAGAAGATGCATGCCCCAATCTTACTACGTTGTAAACATATTTTCTGTGAAGATTGTGTATCAGAGTGGTTTGAGAGAGAAAGGACCTGCCCATTATGCAGGGCTATGGTAAAACATACAGATCTTAGGTCATTTGGGGATGGCTCTACTAGCTTGTTTTTCCAGTTATTCTGA 1293 0.478 MEPNNADVFRPSSSPSSSPNARRISGILSPSNIIQAPLSALLEYSGILPSRSSNHHSQPAPDAVNNDDEVSIRIIGPAEQEQHPREEQQSPPPAAGLVIGLAHSQNDAVLPSASPRGDAEENAVSSGDGVGRDSSYQRYDIQHAARWIEQVLPFSLLLLVVFIRQHLQGFFVTIWIAAVLFKSNDILRKQTALKGERKIPVLIGISVGFALHVVGVYWWYQNDDLMYPLIMLPPKDIPPFWHAIFIIMVNDTLVRQAAMVFKCILLMYYKNSRGRSYRKQGQMLTLVEYLLLLYRALLPTPVWYRFFLNKEYGSLFSSLMTGLYLTFKLTSVVEKVQSFFASVKALSRKEMHYGAYATSEQVNAAGDLCAICQEKMHAPILLRCKHIFCEDCVSEWFERERTCPLCRAMVKHTDLRSFGDGSTSLFFQLF 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00926 430 ProSitePatterns Zinc finger RING-type signature. 384 393 IPR017907 -
Spst1g00926 430 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 343 417 IPR013083 -
Spst1g00926 430 ProSiteProfiles Zinc finger RING-type profile. 369 407 IPR001841 -
Spst1g00926 430 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 17 430 IPR044235 GO:0061630|GO:1904294
Spst1g00926 430 SMART ring_2 369 406 IPR001841 -
Spst1g00926 430 MobiDBLite consensus disorder prediction 7 24 - -
Spst1g00926 430 CDD RING-HC_RNFT1-like 367 407 - -
Spst1g00926 430 SUPERFAMILY RING/U-box 361 412 - -
Spst1g00926 430 Pfam Zinc finger, C3HC4 type (RING finger) 367 412 - -
Spst1g00926 430 MobiDBLite consensus disorder prediction 109 131 - -
Spst1g00926 430 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00926 Spst-Chr1 11476299 11479596 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00926 11 430 C3H Transcription Factor Family AT5G01960 71.127 0.0 621
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00926 - K22379 gmx:100818546 751.125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g00926 1 11476299 11479596 Spst1g00926 1 11476299 11479596 ECH