LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Spst1g00917	ATGTTTCAATTTCAGTACTCCCTTTATTCATCATCCCTTCCATTTGGTTGCTTTTCAGGATATACTGTGATGCCGGCTCTGAGAATTCATGGATATGCCTTGGCTGTTTCGTTTTGTCTTATCACCTTCATAGCAGCATCACAACGAACAGACCCTTCAGAAGGTGAATTTGCATTACGTCTTCAAGTTTTTGAATATTTCTTTTTCACTTTGGTCCATCTGGCCTCTGATTTTGGACACTATACAAGAGAGCTCACGTTAGAGAGAAAGTTTAATGCGCTGATAGACATCAAGAAAAGTTTGATTGATTCTAAGAACAATCTTAAGAACTGGAATAAAGGAGATCCATGTGCAAAAAACTGGACTGGGGTTTGGTGTTTTGATAAGATTGGGGCTGATGGGTACTTCCATGTTCGTGAGATCTACTTGATGAGAATGAATCTCTCCGGAAGTCTATCACCTCAGCTTGATCAGCTATCCAGTCTAGAGATAATGGATTTCATGTGGAACAATCTAACAGGCCCGATACCAAAGGAGATTGGAAACATTAAATCATTGAAACTCTTGCTCCTGAACGGGAATAAGTTATCTGGGAGTTTACCAGACGAGCTTGGCAACCTTCCAAATTTGAATAGATTCCAAGTAGATGAAAACCAATTGTCTGGTCCTATACCAGAGTCACTAGCCAACATGATCAATGTTAGACACCTTCACCTGAACAACAACTCATTTAGTGGTCAACTTCCATCCACACTTTCGAAGCTACCAAGTCTTATGCATTTGCTTGTGGACAACAATAACTTATCTGGCAATCTTCCGCCAGAATACTCTATGTTACATGGATTGGCTATACTCCAGCTTGATAATAACAACTTCAGCGGGAAAGGAATTCCTTCTACCTATGTAAACTTAACCAGGCTAGTGAAATTAAGTCTAAGAAACTGCAGTCTGCATGGAGCTGTTCCTGATTTCAGTTCAATACCCAAGCTTACCTATTTAGATCTAAGCTGGAATCAGTTCACTGGGCCCTTACCGTCAAATAAACTGGCAGACAATATGACAACTATTGATCTGTCCAATAATCATCTCAACGGATCTATTCCTCATAGCTACTCTTATCCTCATCTTCAAAAATTGTCACTTGCGAACAATTTACTGTCGGGGTCCATCCCTGCTAGCATATGGCAGAATACGTCCCTCAGTGTGAAAGATAAACTTTTAATTGATCTACATAACAACTCATTTGAGGATGTTTTGGGAAATCTGGACCTCCCTAAAAATGTTACCTTGAGGCTTTCTGGTAATCCTATCTGCGAGAATTCTAACACACAAAGTGTTGGTCAATATTGTGAACCTGAAGCAGCTGAGGCAGCTCAAACCTCGACAAACTCTACTGTCTGTCCTGTTCAATCTTGTCCAGTGGATGACTTTTATGAATACGCCCCTTCTTCCCCAGTTCCTTGCTTTTGTGCAGCACCTCTGAGAATTGGATACAGGCTGAAAAGTCCAAGTTTTTCTTACTTTGCTCCCTATAGATCTAGTTTTGAACACTATATAACCGATTCCTTAAAATTACACCTCTATCAACTATCAGTAGAGTCAGTTGCTTGGGAAGAGGGACCTCGTCTTCGAATGTACTTGAAACTCTTCCCTTCATATAATGATTCCCGTTCTAATGTGTTCAACGTAAGTGAGGTCCGTCGCATTAGCAACATCTTTACATCTTGGCAATTTCCTCCTTCTGATTTTTTTGGACCATATGAACTCCTGAACTTCACTCTTCTTGGACCTTATGAAAATTTAATTCTTGATTCGGAGAAGGGAAAAAATAGTGTGGGCATAAAAATTGCTGTTGTATTAGCAGCTGCTGCTTGTGCTTTAGCAATATCTGCAATAATTATTCTCCTGATTACTAGAAGAAACATGAAATACCAGAAGAAGATTTCCAGGAAACCTACTAATGTATCTATCAAAATAGATGGCATGAAAGCATTTACTTACAAAGAACTGGCTCTTGCTACTGACAAATTTAATATCTCAACTAAAGTTGGCCAAGGAGGTTATGGGAATGTCTATAAAGGCATTTTAAGTGATGAAACTTTTGTGGCCGTTAAGCGAGCAGAAGCAGGTTCCTTACAAGGACAAAAGGAGTTTTTGACTGAGATTGAGCTTTTGTCAAGGTTGCACCATCGCAATCTTGTTCAACTAATTGGATACTGTAATGAAGAAGGAGAACAGATGCTGGTTTATGACTTCATGTCCAATGGCACCCTAAGGGACTGGATTTCTGGTCGAAGTAGAAAAACCAGGGGGAGCCTAAATTTTAGTATGAGGTTGAGAATTGCAATGGGAGCAGCCAAAGGCATACTTTATCTGCATACAGAGGCTAACCCTCCTATATTTCATAGAGATATTAAAGCCAGTAACATTCTTCTGGACTCCAACTTTACAGCTAAAGTGGCTGATTTTGGACTGTCACGGCTTGTACCAGACTTAGATGAAGAAGGAACTGCTCCTAAATATGTATCAACAGTTGTGAGAGGAACTCCCGGTTACCTGGACCCAGAATATTTGTTGACTCATAAGCTAACAGACAAATGTGATGTCTATAGCCTGGGAATTGTGTATCTAGAGCTTTTGACAGGCATGCAACCAATATCACATGGGAAAAACATTGTCCGCGAGGTTAATATGGCTCGTGAATCTGGCACAGTATATTCCATCATAGACAGCAGAATGGGGTTGTATCCATCTGATTGCTTGGACAAGTTCTTAGCTCTGGCCCTCAGTTGTTGCCAAGACAATCCAGAGGACAGGCCATCAATGCTAGATGTGGTGAGGAAACTTGAAGATATCATTGCAATGTTGCCCGAAGCTGAAACCCTTTTCTCTGATGTTAGCTTGCACAATTCTGGCAACGTAGCACCACCCTCATCGTCAGCATCAACATCAGGATCCCATGTGACAAGGGAGGAGCAACACATGTCCTCGTATGTGTCAGGAAGCAATCTTGTCAGTGATGTCATTCCCACCATTGTTCCTCGCTGA	3048	0.4088	MFQFQYSLYSSSLPFGCFSGYTVMPALRIHGYALAVSFCLITFIAASQRTDPSEGEFALRLQVFEYFFFTLVHLASDFGHYTRELTLERKFNALIDIKKSLIDSKNNLKNWNKGDPCAKNWTGVWCFDKIGADGYFHVREIYLMRMNLSGSLSPQLDQLSSLEIMDFMWNNLTGPIPKEIGNIKSLKLLLLNGNKLSGSLPDELGNLPNLNRFQVDENQLSGPIPESLANMINVRHLHLNNNSFSGQLPSTLSKLPSLMHLLVDNNNLSGNLPPEYSMLHGLAILQLDNNNFSGKGIPSTYVNLTRLVKLSLRNCSLHGAVPDFSSIPKLTYLDLSWNQFTGPLPSNKLADNMTTIDLSNNHLNGSIPHSYSYPHLQKLSLANNLLSGSIPASIWQNTSLSVKDKLLIDLHNNSFEDVLGNLDLPKNVTLRLSGNPICENSNTQSVGQYCEPEAAEAAQTSTNSTVCPVQSCPVDDFYEYAPSSPVPCFCAAPLRIGYRLKSPSFSYFAPYRSSFEHYITDSLKLHLYQLSVESVAWEEGPRLRMYLKLFPSYNDSRSNVFNVSEVRRISNIFTSWQFPPSDFFGPYELLNFTLLGPYENLILDSEKGKNSVGIKIAVVLAAAACALAISAIIILLITRRNMKYQKKISRKPTNVSIKIDGMKAFTYKELALATDKFNISTKVGQGGYGNVYKGILSDETFVAVKRAEAGSLQGQKEFLTEIELLSRLHHRNLVQLIGYCNEEGEQMLVYDFMSNGTLRDWISGRSRKTRGSLNFSMRLRIAMGAAKGILYLHTEANPPIFHRDIKASNILLDSNFTAKVADFGLSRLVPDLDEEGTAPKYVSTVVRGTPGYLDPEYLLTHKLTDKCDVYSLGIVYLELLTGMQPISHGKNIVREVNMARESGTVYSIIDSRMGLYPSDCLDKFLALALSCCQDNPEDRPSMLDVVRKLEDIIAMLPEAETLFSDVSLHNSGNVAPPSSSASTSGSHVTREEQHMSSYVSGSNLVSDVIPTIVPR	1015

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Spst1g00917	1015	ProSiteProfiles	Protein kinase domain profile.	677	953	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Spst1g00917	1015	ProSitePatterns	Protein kinases ATP-binding region signature.	683	705	IPR017441	GO:0005524
	Spst1g00917	1015	CDD	STKc_IRAK	683	952	-	-
	Spst1g00917	1015	PANTHER	RECEPTOR-LIKE PROTEIN 55	97	952	-	-
	Spst1g00917	1015	SMART	serkin_6	677	953	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Spst1g00917	1015	SUPERFAMILY	L domain-like	103	440	-	-
	Spst1g00917	1015	FunFam	Probable LRR receptor-like serine/threonine-protein kinase At1g06840	88	249	-	-
	Spst1g00917	1015	Gene3D	Ribonuclease Inhibitor	281	474	IPR032675	-
	Spst1g00917	1015	MobiDBLite	consensus disorder prediction	973	998	-	-
	Spst1g00917	1015	Pfam	Leucine rich repeat N-terminal domain	92	126	IPR013210	-
	Spst1g00917	1015	Gene3D	Phosphorylase Kinase; domain 1	647	752	-	-
	Spst1g00917	1015	Pfam	Protein kinase domain	678	947	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Spst1g00917	1015	FunFam	Leucine-rich repeat protein kinase family protein	641	752	-	-
	Spst1g00917	1015	SUPERFAMILY	Protein kinase-like (PK-like)	662	977	IPR011009	-
	Spst1g00917	1015	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	800	812	IPR008271	GO:0004672\|GO:0006468
	Spst1g00917	1015	FunFam	LRR receptor-like serine/threonine-protein kinase HSL2	753	965	-	-
	Spst1g00917	1015	Gene3D	Transferase(Phosphotransferase) domain 1	753	963	-	-
	Spst1g00917	1015	Gene3D	Ribonuclease Inhibitor	209	280	IPR032675	-
	Spst1g00917	1015	Gene3D	Ribonuclease Inhibitor	89	208	IPR032675	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Spst1g00917	Spst-Chr1	11408838	11417410	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Spst1g00917	28	961	Receptor kinase-like Gene Family	AT5G01950	57.917	0.0	1068

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-VIII-1	Spst1g00917		Pkinase	1.3e-47	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Spst1g00917	-		-	gmx:100815005	1593.17