Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00909 ATGCTACGGTCCTACTTTACCACAATACCAATTTTCCTACTCCTGCTTGTGTCTCCTCAAACTAAAGCTGATCTATACTTAGAAAAGCAAGCCCTACTTGATTTTGCTGCTGGACTTCATCATGGTCCAAAAGTCAACTGGAACTCTAGTTCCTCAATCTGCACTTCATGGGTGGGCGTTACATGCAGTCATGATGGCTCCCATGTGCTTTCTGTGAGGCTTCCAGGTGTAGGATTGCGCGGTTCTCTCCCACCAAACACACTTGGTAAGCTTAATGGCCTCATTAGTCTCAGTCTTAGGTCCAACAGCTTGATGGGGAACCTTCCATCTGACCTACTTTCCCTTCCTTCTCTGCGCTTTGTATATCTCCAACACAACAACTTCTCAGGTCATATTCCTGATTCTCTACCACCCCGGCTTTTCTTTCTTGATTTGTCCTATAACTCTTTCACAGGACAAATTCCAACCTCAATCCAAAACTTGACACAACTAATAGGACTCAACCTCCAAAACAACTCTCTCACAGGATCTATTCCTGATGTTAACCTTCCAAGCCTTAAGAATTTGGATTTGAGCTTCAACTACTTGAATGGTTCTATTCCTTCGCGTTTCCATAAGTTTCCTGGCTCCTCATATAGAGGGAATTTGATGTTATGTGGAGCACCTTTGAAACAATGTTCTTCAGTTTCCACTACTACCACATTGTCTCCGTCAACAGTCTCTCAAAGACTAAGTGATCCATCAAACAGGAAAATGAGCAAGGGGGCAAAAATAGCAATTATTTTGGGGGTTGTGGCATTGCTGTTTCTTCCAGGTCTTATAGTAGCGTTTTGCTGTTTCAAGAAAAAGGTTGGTGAACAAAATGTTGCACCTACGAAGAAAGGTCAGAAGCTTAAGGAGGACTTTGGTAGTGGTGTGCAAGAACCTGAGAGAAACAAGCTTGTATTTTTTGAAGGTTGTTCTTATAATTTTGATCTGGAGGACTTGTTAAGAGCTTCAGCTGAAGTTCTTGGGAAGGGAAGTTGTGGAACGACATATAAAGCCATCTTGGAGGATGGAACGACAGTGGTCGTGAAGAGGTTAAAAGAGTTGGCTATGGGGAAAAAAGAATTTGAACAGCAAATGGAGATTGTCCAAAGACTTGATCATCACCCAAATCTGATTCCCCTTCGTGCTTACTACTATTCAAAAGATGAAAAACTAATGGTTTATGACTACTCAACAGCCGAAAGTTTTTCCAAGTTATTGCATGGAACCAGGGAAAATGGACGAGCTCCACTAGATTGGGATTCAAGATTGAAGATCATGGTTGGAGCTGCAAGGGGCGTTTGTCATATCCACTCAGCCAATGGAAGGAAACTTGTCCATGGCAATATAAAATCGTCTAATGTGATTCTCTCGATGGATCTCCAGGGCTGTATATCAGATTTTGGCCTAAGTCCCCTAACAAATTTCTGTGCCTCCTCCAGAAGTCCAGGCTATGGAGCACCTGAAGTTATTGAAACAAGAAAGTTCACTCAAAAATCTGACGTGTACAGCTTTGGTGTTCTCCTTCTTGAGATGCTGACTGGAAAAACACCAGTTCAGTACTCAGGGCATGATGAAGAGTTTGATCTTCCAAAATGGGTCCAATCTGTTGTTAGAGAGGAATGGACTGCTGAAGTGTTTGATCTTGAGCTAATGAGGTATCCAAACATTGAAGATGAACTTGTGCAGATGCTGCAACTGGCAATGGCATGTGTAGCGATGGTGCCTGACACAAGACCCTCAATGGAGGAAGTTGTTAGGACAATTGAAGAAATTAGAGCTTGCATTTATTAA 1821 0.4239 MLRSYFTTIPIFLLLLVSPQTKADLYLEKQALLDFAAGLHHGPKVNWNSSSSICTSWVGVTCSHDGSHVLSVRLPGVGLRGSLPPNTLGKLNGLISLSLRSNSLMGNLPSDLLSLPSLRFVYLQHNNFSGHIPDSLPPRLFFLDLSYNSFTGQIPTSIQNLTQLIGLNLQNNSLTGSIPDVNLPSLKNLDLSFNYLNGSIPSRFHKFPGSSYRGNLMLCGAPLKQCSSVSTTTTLSPSTVSQRLSDPSNRKMSKGAKIAIILGVVALLFLPGLIVAFCCFKKKVGEQNVAPTKKGQKLKEDFGSGVQEPERNKLVFFEGCSYNFDLEDLLRASAEVLGKGSCGTTYKAILEDGTTVVVKRLKELAMGKKEFEQQMEIVQRLDHHPNLIPLRAYYYSKDEKLMVYDYSTAESFSKLLHGTRENGRAPLDWDSRLKIMVGAARGVCHIHSANGRKLVHGNIKSSNVILSMDLQGCISDFGLSPLTNFCASSRSPGYGAPEVIETRKFTQKSDVYSFGVLLLEMLTGKTPVQYSGHDEEFDLPKWVQSVVREEWTAEVFDLELMRYPNIEDELVQMLQLAMACVAMVPDTRPSMEEVVRTIEEIRACIY 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00909 606 Gene3D Ribonuclease Inhibitor 27 138 IPR032675 -
Spst1g00909 606 PANTHER OS05G0588300 PROTEIN 9 602 - -
Spst1g00909 606 FunFam Probable inactive receptor kinase RLK902 25 182 - -
Spst1g00909 606 Pfam Protein kinase domain 334 596 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst1g00909 606 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 407 604 - -
Spst1g00909 606 MobiDBLite consensus disorder prediction 231 249 - -
Spst1g00909 606 Gene3D Phosphorylase Kinase; domain 1 298 406 - -
Spst1g00909 606 Pfam Leucine rich repeat N-terminal domain 28 63 IPR013210 -
Spst1g00909 606 SUPERFAMILY L domain-like 45 209 - -
Spst1g00909 606 SUPERFAMILY Protein kinase-like (PK-like) 335 598 IPR011009 -
Spst1g00909 606 Gene3D Transferase(Phosphotransferase) domain 1 409 604 - -
Spst1g00909 606 Gene3D Ribonuclease Inhibitor 139 228 IPR032675 -
Spst1g00909 606 FunFam pollen receptor-like kinase 1 299 406 - -
Spst1g00909 606 MobiDBLite consensus disorder prediction 231 250 - -
Spst1g00909 606 ProSiteProfiles Protein kinase domain profile. 331 601 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00909 Spst-Chr1 11343837 11345918 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00909 23 602 Receptor kinase-like Gene Family AT5G58300 60.884 0.0 707
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Spst1g00909 Pkinase 7.3e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00909 - - var:108321341 1108.2