Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00901 ATGGTCATGGCTTCTCTGCTGCCTACAACTGCAACAACACTTCAACATAATCACACCACCTGTTTCTCTCCTCTCAAACCCACCATCCCAATTACCATTTTCTTCTCAACAAACCGTTTCAAGAGTAGCTCTAGAAAGTGCAACGCAGTGTTTGGTAACATTCCCAAAGACTTGTTAGAGACCACTTTTCACGTGGACCAGTTTCCTGTCTTCCAATCAGTGTCAGTGAAGTTTCAGAATGTAACTGAAGATTTATCAGACTTGCAGAGGTGGGGGTTTGTGATACTTGCAGGCCTGACATGGGCTTATTTAACTGCCAGGCCGGGTGTTCTTGTCGGCGCCATTGATGCATTCCTTTTGGCTCCTTTGCAACTCGTTTTGGACAGTTTATCTGGAAGGAGAAATCTCAAGAGAACTGATTTTCTTATTGGAGATAAGCTAGGAGAAGGGTCATTTGGTGTTGTTTATTCAGGTGTTTTGGTCCCAAAGAATGTAGATGTACAAAAGTGGATGCAGAAAAATGGAAGAGGCAAGGCGACAAAGTTGGATGCCAAATCTAAGGACAAAGTCATTCTTAAAAAGGTGAAGGTTGGAATTGAAGGGGCAGAGGAATTTGGTGATTTTGAGGAGTGGTTCAATTACAGACTCTCTAGAGCAGCTCCTGAAACATGTGCTAAGTTTCTTGGAAGTTTTGTAGCTGACAAAACCAATTCAGAGTTCACAAAAGGTGGAAAATGGCTAGTTTGGAAGTTTGAGGGAGGGCGCTCTCTTGCTGATTACATGGCTGATCAAAGCTTCCCTTCAAACTTGGAGTCTACCATGTTTGGACGTGTCTTGCAGGGTGTAGACTCTTCTAAACGAAATGCATTGATCATCAAGCAAATAATGCGCCAGATCATTACTTCTCTTAAGAAAATTCACGACACTGGCATTGTTCACAGGGATGTTAAGCCTGCCAACTTGGTAGTTACCATACGGGGGCAGATTAAACTAATCGATTTTGGTGCAGCAACAGACCTTAGAATTGGAAAGAATTATGTTCCCAATCGTACCCCTTTGGATCGTGACTACTGTCCCCCTGAACTATATGTTCTACCAGAAGAAACACTTGATCTTCCACCAGAGCCAATTGCAGCTTTGCTTTCACCAATCTTGTGGCAGTTTAACAGTCCTGATCTGTTTGATATGTATTCTGCTGGGATTGTCCTCCTGCAAATAGCAATTCCAACCTTAAGGTCTTCATCTGCTTTGAAGAATTTCAATTTGGAGATAAGAACATGTGGATATGATTTGAACAAATGGAGAGCGTCTACTCGCATGAGGTCTGACTTCCAAATTCTTGATACTGACTCTAGTAGAGGGTGGGACTTGGCAACAAAGCTTATCTCCAAGAGAGGTTCCCAATTAAGAGGACGTTTATCTGCTGCTGCTGCTTTGAGGCATCCTTATTTCCTTCTGGGTGGGGATCAGGCCGCTGCAGTCCTTTCAAAACTAAGCTTTTAA 1503 0.4298 MVMASLLPTTATTLQHNHTTCFSPLKPTIPITIFFSTNRFKSSSRKCNAVFGNIPKDLLETTFHVDQFPVFQSVSVKFQNVTEDLSDLQRWGFVILAGLTWAYLTARPGVLVGAIDAFLLAPLQLVLDSLSGRRNLKRTDFLIGDKLGEGSFGVVYSGVLVPKNVDVQKWMQKNGRGKATKLDAKSKDKVILKKVKVGIEGAEEFGDFEEWFNYRLSRAAPETCAKFLGSFVADKTNSEFTKGGKWLVWKFEGGRSLADYMADQSFPSNLESTMFGRVLQGVDSSKRNALIIKQIMRQIITSLKKIHDTGIVHRDVKPANLVVTIRGQIKLIDFGAATDLRIGKNYVPNRTPLDRDYCPPELYVLPEETLDLPPEPIAALLSPILWQFNSPDLFDMYSAGIVLLQIAIPTLRSSSALKNFNLEIRTCGYDLNKWRASTRMRSDFQILDTDSSRGWDLATKLISKRGSQLRGRLSAAAALRHPYFLLGGDQAAAVLSKLSF 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00901 500 ProSitePatterns Serine/Threonine protein kinases active-site signature. 311 323 IPR008271 GO:0004672|GO:0006468
Spst1g00901 500 PANTHER SERINE/THREONINE-PROTEIN KINASE STN8, CHLOROPLASTIC-RELATED 50 499 - -
Spst1g00901 500 SUPERFAMILY Protein kinase-like (PK-like) 138 485 IPR011009 -
Spst1g00901 500 Pfam Protein kinase domain 291 484 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst1g00901 500 Gene3D Transferase(Phosphotransferase) domain 1 280 486 - -
Spst1g00901 500 ProSiteProfiles Protein kinase domain profile. 141 484 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst1g00901 500 Gene3D Phosphorylase Kinase; domain 1 129 251 - -
Spst1g00901 500 SMART serkin_6 141 484 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00901 Spst-Chr1 11301022 11303988 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00901 141 340 MAP Kinase Kinase Kinase AT3G13530 24.631 8.66e-10 59.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Group-Pl-4 Spst1g00901 Pkinase 3.4e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00901 - - gmx:100795624 880.552
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g00901 1 11301022 11303988 Spst1g00901 1 11301022 11303988 ECH
Spst1g00901 1 11301022 11303988 Spst4g00844 4 36118924 36121638 PCT