Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00895 ATGAGTTCTGATGAGTCCTTGCTTTTGGAATCGGATCCTCGTCCTGTGATTCATCACCGCCGAGGGAAATCGGGTTCCCGAAGCTACCTCTGTGGCCATGGTTCCTTCTCGTCTCCCATGTTCGACGTGGCTCTGGAGAGCTGCGATTTGGATGTGAAAGAGCGAGACAAGGAGGTTGTGTTGTCTAGCGATCGTAGCTTCCTCACTCCATCGTTTAGTAACAGTAATATCTCTGAGAGGTGTGTTGTTGAGTCGCAGTTCCCCTGGCAGTTTCCCTTGGAATGCCCCACGCGCGAGAGGAGGCGCTCGGCATCGTGGGGTGCAATGGAGCTGCATGGTGCTGATAACCGGAGCTTGCCCTTTGAGATATCCGGAGCTTCGTCTCATGTGCAGGATAGGTTGAGTAGTAAATCGCAGAGGATTAGGCAGAAGAGTGTGCAGTTTGAGGATCCTGCTTTTCAGGAGGATGGTGCTAGGTTGATCTATATCAATGATCCCAGGAAGACCAACGACAAGTATGAGTTCACCGGGAATGAGATCCGAACTAGTAGATACACCTTTGTTACCTTTTTGCCCAAGAATCTTTTCATTCAGTTTCATAGGGTTGCGTATCTGTATTTCCTTGCTATTGCTGCGCTGAATCAGCTTCCTCCTCTGGCTGTGTTTGGGAGGACTGTGTCTCTTTTCCCTCTGTTGTTTGTGCTCTGTGTCACGGCTATTAAGGATGGCTATGAGGATTGGCGGCGGCACAGGTCAGATCGCAATGAAAACAACCGGGAGTCTCTAGTGTTTCAGTCCGGCGATTTCCGATCAAAGAAGTGGAAAAAAATACAAGCTGGGGAGGTTGTTAAGATCTTTGCCGATGAGACTATTCCGGCTGATATGGTCTTGTTGGGGACGAGTGATCAAAGTGGGCTTGCCTATATTCAGACAATGAATTTGGATGGAGAGTCAAATCTGAAGACAAGGTATGCTAGGCAGGAAACAGCTTCAGCGGTTGCTTCGGAATCTTGTGATGTTTTTGGGGTAATTAGGTGTGAGCAACCGAACCGGAATATTTATGAGTTCACTGCCAACATGGAGTTCAATGGACATAAATTTTCCCTTAGCCAGTCAAACATTGTTCTGCGTGGGTGCCAGCTAAAGAACACGGATTGGATAATTGGTGTTGTAGTTTATGCAGGACAGGAAACAAAAGCAATGCTGAACAGTGCAGCATCTCCTTCCAAGAGAAGCAGACTGGAAAGTTACATGAACAGAGAAACCCTTTGGTTGTCTGTTTTTCTTTTTATCATGTGTTTGGTTGTGGCCATTGGGATGTGTCTTTGGCTGGTACGGCACAATAACCAGCTTGATACCTTACCTTACTACAGAAAAAGATACTTCACCAATGGTCCGGATAATAGAAAGAGATACAAGTATTATGGGATTCCGATGGAAGCATTTTTCTCCTTTTTGAGTTCTGTTATAGTGTTTCAGATAATGATACCAATATCTCTTTACATCACAATGGAGTTGGTTCGATTGGGTCAGTCATACTTCATGATCGAAGACAGGGACATGTATGATGCCAGCTCGGGGTCAAGGTTCCAGTGTCGATCATTAAACATAAACGAAGATTTGGGTCAAATACGCTATGTTTTTTCAGACAAGACTGGAACGCTAACAGAAAACAAAATGGAATTCAGGAGGGCTAGTGTACATGGGAAGAACTATGGGAGCTCCTTGCCTATGGTTGATAATACAGCTGCCGCTGATGTTACTCCTCCTAAACGCAGATGGAAGCTCAAATCTGAAATTGCAGTTGATTCTGAACTGATGATAATGTTGCAGAGTAACTCAAATAAAGAAGAAAAAATTGCTGGTCATGAGTTTTTTCTTACACTAGCTGCTTGTAACACTGTAATCCCTATAGTTGGTGATGATGGATTTTCCAGTTGTGGAGCTAATGAATTAAATGAAGATAATAGACACGTTGATTACCAGGGAGAATCCCCTGATGAACAAGCTCTAGTTTCTGCAGCCTCTGCATATGGATATACACTTTTTGAACGTACATCAGGACATATTGTTATTGACGTCAACGGTGAGAAACTCAGATTGGATGTATTGGGTCTTCATGAGTTTGATAGTGTGCGAAAGAGAATGTCTGTTGTCATTCGATTTCCTGACAATGCGGTAAAGGTGTTAGTCAAAGGTGCTGATACTTCAATGTTTAGCATTTTGGAAAATGGCAGTGCGAGTAACAATAATATATGGCATACAACCCAGAGCCATTTGAATGAATATTCTTCACAAGGTTTGCGCACTCTTGTAATTGCCTCCAGGGATCTTTCCGATGCTGAACTTGAGGAGTGGCAAAGCCGGTATGAAGAGGCAAGCACTTCGTTGACTGACAGAGCTACTAAACTACGGCAAACAGCAGCTCTTATAGAAAGCAATTTAAAGTTACTTGGAGCAACTGGAATTGAGGACAAGCTACAGGAGGGTGTACCCGAAGCCATTGAATCTCTACGGCAAGCTGGAATCAAGGTCTGGGTTCTTACTGGTGATAAGCAAGAGACAGCAATTTCAATTGGTCTTTCTTGCAAACTTCTTACTGGAGATATGCAGCAGATTATTATAAATGGCACTTCCGAGGTCGAATGTAGAAATCTTTTGGTGGATGCTAAATCCAAATATGGTGTGAAATCTTCAAGTGGAGGTCGTCGGAATTTGAAACACAAAACTAATGCTGGGCATGGCGATCTTGATATTCCCAATGGTTTTCCCAAATGGAATCCTGGAAAGGAAGAGGGAAGTATTGCTCCATTGGCACTGATAATTGATGGAAACAGTTTGGTTTATATTTTGGAGAAGGAACTGGAGTCAGAGCTTTTCGACCTAGCAACTTCCTGCAGGGTTGTGCTGTGCTGTCGTGTTGCACCCTTGCAAAAGGCAGGAATTGTTGATCTGATCAAAAGCCGGACAGATGATATGACACTGGCCATAGGTGATGGGGCCAATGACGTGTCAATGATCCAAATGGCAGATGTTGGTGTAGGAATATGTGGGCAGGAAGGGCGCCAAGCAGTGATGGCATCAGATTTTGCTATGGGACAGTTTCAGTTTTTGAAAAAATTACTTCTGGTTCATGGGCACTGGAATTATCAGCGTGTTGGTTATTTAGTTCTTTACAACTTCTACCGGAATGCTGTCTTCGTATTGATGTTATTTTGGTATATATTATGCACGGCTTTTTCTACAACTTCTGCGTTGACAGATTGGAGTAGTGTTTTCTATTCTGTGATATACACATCTGTTCCTACTATTATTGTTGGTATTCAGGACAAGGACTTGAGTCATCGGACACTATTGCAGTATCCAAAACTGTATGGTTCAGGTCACAGACAGGAAGCTTACAATATGCAATTATTTTGGATCACAATGATTGACACTGTATGGCAGAGCCTTGTTCTTTTCTACATCCCATTGTTTACATATAAGGACAGTTCAATTGACATATGGAGCATGGGCAGTTTGTGGACGATTGCAGTTGTTATCCTTGTAAATGTACACCTTGGTATGGACATCAACCGTTGGGTATTGATTACTCATGTTGCTATCTGGGGATCGATAATCATTACATACGGTTGCATGGTGATATTGGATTCTATACCTGTCTTTCCCAATTACTGGACTATTTATCATCTGGCAAGTTCCCCTACATATTGGATAACAATTTTGCTTATAATTATTGTGGCATTGCTCCCTCGCTTTATTTGCAAAGTTGTCTATCAAATTTTTTGGCCTTCAGACATCCAGATAGCTAGAGAAGCTGAGTTAATGAGAAAGCGACATAGTCATTTGCAGCCAAGGCAACAAGTTTCAAGTTAA 3876 0.4296 MSSDESLLLESDPRPVIHHRRGKSGSRSYLCGHGSFSSPMFDVALESCDLDVKERDKEVVLSSDRSFLTPSFSNSNISERCVVESQFPWQFPLECPTRERRRSASWGAMELHGADNRSLPFEISGASSHVQDRLSSKSQRIRQKSVQFEDPAFQEDGARLIYINDPRKTNDKYEFTGNEIRTSRYTFVTFLPKNLFIQFHRVAYLYFLAIAALNQLPPLAVFGRTVSLFPLLFVLCVTAIKDGYEDWRRHRSDRNENNRESLVFQSGDFRSKKWKKIQAGEVVKIFADETIPADMVLLGTSDQSGLAYIQTMNLDGESNLKTRYARQETASAVASESCDVFGVIRCEQPNRNIYEFTANMEFNGHKFSLSQSNIVLRGCQLKNTDWIIGVVVYAGQETKAMLNSAASPSKRSRLESYMNRETLWLSVFLFIMCLVVAIGMCLWLVRHNNQLDTLPYYRKRYFTNGPDNRKRYKYYGIPMEAFFSFLSSVIVFQIMIPISLYITMELVRLGQSYFMIEDRDMYDASSGSRFQCRSLNINEDLGQIRYVFSDKTGTLTENKMEFRRASVHGKNYGSSLPMVDNTAAADVTPPKRRWKLKSEIAVDSELMIMLQSNSNKEEKIAGHEFFLTLAACNTVIPIVGDDGFSSCGANELNEDNRHVDYQGESPDEQALVSAASAYGYTLFERTSGHIVIDVNGEKLRLDVLGLHEFDSVRKRMSVVIRFPDNAVKVLVKGADTSMFSILENGSASNNNIWHTTQSHLNEYSSQGLRTLVIASRDLSDAELEEWQSRYEEASTSLTDRATKLRQTAALIESNLKLLGATGIEDKLQEGVPEAIESLRQAGIKVWVLTGDKQETAISIGLSCKLLTGDMQQIIINGTSEVECRNLLVDAKSKYGVKSSSGGRRNLKHKTNAGHGDLDIPNGFPKWNPGKEEGSIAPLALIIDGNSLVYILEKELESELFDLATSCRVVLCCRVAPLQKAGIVDLIKSRTDDMTLAIGDGANDVSMIQMADVGVGICGQEGRQAVMASDFAMGQFQFLKKLLLVHGHWNYQRVGYLVLYNFYRNAVFVLMLFWYILCTAFSTTSALTDWSSVFYSVIYTSVPTIIVGIQDKDLSHRTLLQYPKLYGSGHRQEAYNMQLFWITMIDTVWQSLVLFYIPLFTYKDSSIDIWSMGSLWTIAVVILVNVHLGMDINRWVLITHVAIWGSIIITYGCMVILDSIPVFPNYWTIYHLASSPTYWITILLIIIVALLPRFICKVVYQIFWPSDIQIAREAELMRKRHSHLQPRQQVSS 1291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00895 1291 SUPERFAMILY HAD-like 535 1041 IPR036412 -
Spst1g00895 1291 Gene3D - 234 404 - -
Spst1g00895 1291 Pfam E1-E2 ATPase 259 506 - -
Spst1g00895 1291 SFLD C1.7: P-type atpase like 532 1048 - -
Spst1g00895 1291 Gene3D - 814 1037 IPR023214 -
Spst1g00895 1291 MobiDBLite consensus disorder prediction 1 26 - -
Spst1g00895 1291 FunFam Phospholipid-transporting ATPase 814 1037 - -
Spst1g00895 1291 SUPERFAMILY Calcium ATPase, transmembrane domain M 175 1264 IPR023298 -
Spst1g00895 1291 Pfam Phospholipid-translocating ATPase N-terminal 161 226 IPR032631 -
Spst1g00895 1291 NCBIfam HAD-IC family P-type ATPase 808 866 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Spst1g00895 1291 NCBIfam HAD-IC family P-type ATPase 967 1083 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Spst1g00895 1291 Pfam Cation transport ATPase (P-type) 651 739 - -
Spst1g00895 1291 ProSitePatterns E1-E2 ATPases phosphorylation site. 550 556 IPR018303 -
Spst1g00895 1291 SUPERFAMILY Calcium ATPase, transduction domain A 259 400 IPR008250 -
Spst1g00895 1291 PRINTS P-type cation-transporting ATPase superfamily signature 548 562 - -
Spst1g00895 1291 PRINTS P-type cation-transporting ATPase superfamily signature 997 1016 - -
Spst1g00895 1291 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 554 831 IPR023299 GO:0000166
Spst1g00895 1291 Pfam Phospholipid-translocating P-type ATPase C-terminal 1025 1265 IPR032630 -
Spst1g00895 1291 FunFam Phospholipid-transporting ATPase 660 795 - -
Spst1g00895 1291 SFLD p-type atpase 532 1048 IPR044492 -
Spst1g00895 1291 CDD P-type_ATPase_APLT_Dnf-like 177 1157 - -
Spst1g00895 1291 Gene3D - 658 797 IPR023299 GO:0000166
Spst1g00895 1291 NCBIfam phospholipid-translocating P-type ATPase 175 1272 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016020|GO:0140326
Spst1g00895 1291 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 147 1277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00895 Spst-Chr1 11270520 11276161 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00895 115 1274 Primary Pumps ATPases AT5G04930 56.492 0.0 1329
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00895 K14802 - gmx:100789830 2313.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g00895 1 11270520 11276161 Spst1g00895 1 11270520 11276161 ECH
Spst1g00895 1 11270520 11276161 Spst4g00843 4 36075950 36085752 PCT