Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00894 ATGGACAACCTTGGCGATTCTAGTCGGAAGAGAGCAATTGAGGAGCTTCTTAGAGGTCGAGATTGTGCTGAACAACTTAGCAGTGTCATCACTGGGAGTTGTGAAAAAGGGTCATCAGCAACCCCATTTGCTAAGAAACTCGTGAAGGAGGTGCTCATGTCCTTCACCAACTCCCTCTTGCTCTTGAACAACAATTCTACTTCTGGATCCCATGGTGTCTCCAATGTTCAAGTTTGGGACTCTCCAAAATCTGAGGACTCTCTAGAGAGCAATTGCAAGAGTTCCACTGTTAAAGAACGAAGAGGGTGTCACAAGAGAAGAAGAACTGAACGAACAAGGGAGAAGGAGTCTGAAGCTCCAATTGATGATGGCCACCAATGGAGAAAGTATGGGCAAAAGGATATCCTGAATGCCCAATTCCCAAGGCACTACTATAGGTGCACTCACAGATTTGACCAGGGTTGCCAAGCAACAAAGCAGGTGCAAAGAGTTCAAGAGGATCCAATCCTGTACAAGACCATCTACTATGGTGAACACACTTGCAAGAGCTTGGCAAATCCTCAGATCATACTTGACCCTATGTCTCCTTCATCTACTTCAAAGTTCCTGAGCTTTAACAACTCCTTCCCTACCCCATCCAAACAAGAGTGCCCCTTTCTCTCGTCTTCTTTCCCTTCATCAGTGGAAAGGAAGTGCAAGGAGGAGGTTCCTCCCTCAACTTCCTCAAATGATTACCTCATCTCTTCTGACCTCACCTTTGATAGCTCACCAAGGCAGGTCACTCTATCATCATCAACACCAGACTCAGAGTACAATAGTGTGGACCTTTCAGATGTCTTCTATGGGATGGATGATCTCTCTGAACCCCTTTTCCAACTTAGATAA 885 0.4565 MDNLGDSSRKRAIEELLRGRDCAEQLSSVITGSCEKGSSATPFAKKLVKEVLMSFTNSLLLLNNNSTSGSHGVSNVQVWDSPKSEDSLESNCKSSTVKERRGCHKRRRTERTREKESEAPIDDGHQWRKYGQKDILNAQFPRHYYRCTHRFDQGCQATKQVQRVQEDPILYKTIYYGEHTCKSLANPQIILDPMSPSSTSKFLSFNNSFPTPSKQECPFLSSSFPSSVERKCKEEVPPSTSSNDYLISSDLTFDSSPRQVTLSSSTPDSEYNSVDLSDVFYGMDDLSEPLFQLR 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00894 294 Gene3D WRKY domain 107 183 IPR036576 GO:0003700|GO:0006355|GO:0043565
Spst1g00894 294 SUPERFAMILY WRKY DNA-binding domain 119 182 IPR036576 GO:0003700|GO:0006355|GO:0043565
Spst1g00894 294 ProSiteProfiles WRKY domain profile. 116 179 IPR003657 GO:0003700|GO:0006355|GO:0043565
Spst1g00894 294 MobiDBLite consensus disorder prediction 82 119 - -
Spst1g00894 294 SMART WRKY_cls 121 183 IPR003657 GO:0003700|GO:0006355|GO:0043565
Spst1g00894 294 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 16 211 IPR044810 GO:0003700
Spst1g00894 294 Pfam WRKY DNA -binding domain 122 182 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00894 Spst-Chr1 11261947 11263394 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00894 7 185 WRKY Transcription Factor Family AT3G56400 36.559 1.80e-35 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Spst1g00894 WRKY 2.6e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00894 - - gmx:100170682 437.958
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g00894 1 11261947 11263394 Spst1g00894 1 11261947 11263394 ECH
Spst1g00894 1 11261947 11263394 Spst4g00841 4 36054793 36056036 PCT