Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00891 ATGGAGATGGAGTATGTGTTTGGAGGGGAGGTGTTTGTAAAATGTCCTAAACCACCCGCAACATTAGAAGCGAGGGTGGGAGGGAGGGTTTGTTTGTTAGCTGCGTGCAACACTCCTGAGAAGGTGACACCTGTATTCAAGTATTCATCATCAAATCATCCCTCCTACTGTGCTACAGTGTCTCGTGTTAAGAAGAAACTTCCCCTTCTGTTTGTGAGCATGTGTGCGTTGTTTCTGGTTCTTCTTGCTCCGGTTATGTTTGTAATTTCTGTGGACCCTGGTTTCAATGATGATGTGTTGGGGTTGATTGTGTTCAAGGCTGGTTTGGAGGACCCCAAAAGGAAACTCTCTTCCTGGAATGAGGATGATAACAGTCCTTGCAACTGGGAAGGTGTGAAGTGTGATCCTTCATCCAATAGGGTCACTGCTCTTGTTCTTGATGGGTTCTCTCTTTCTGGGCATGTTGATAGGGGCTTATTGAGGTTGCAGTTCCTTCAAATTCTCTCACTTTCAAGGAACAACTTCACAGGGCCTATAAACCCCGATCTTCCTCGCCTTGGGAGTTTACAAGCTGTGGACTTCAGTGACAACAATCTCTCTGGGGAGATCCCAGAAGGGTTTTTCCAACAATGTGGCTCGCTCAGGATAGTTTCATTTGCTAAGAACAACCTCACAGGTAAAATTCCCGAGTCCTTGAGTTCATGCTCCAATTTGGCAACTGTTAACTTTTCCTCCAATCAGCTCCATGGGGAATTGCCGAATGGAGTGTGGTTCTTGAGGGGGCTACAGTCACTTGATCTGTCAGACAACTTGCTGGAGGGAGAGATTCCTCAAGGCATTCAGAATCTGTTTGACATGAGGGAGTTGAGTCTTCAGAAGAACAGGTTTAGTGGAAGGCTTCCTGGGGATATTGGAGGCTGCTTACTTCTGAAATCACTTGACTTGAGTGGTAATTTTCTCTCTGGGGAACTCCCTCAGTCAATGCAAAGACTCACATCTTGCACGGCACTTAGTTTGCAGGGAAATTCATTAACAGGGGGCATTCCTGACTGGATTGGGGAATTGAAGAATCTAGAGACGTTGGATCTTTCTGCCAATGGATTTTCTGGTTGGATTCCTAAGACATTAGGAAATCTTGACTCTTTACATAGATTGAATTTGTCCAGGAATCAGTTGTCAGGAAACTTGCCTGATTCTATGCTTAACTGCACTAAGCTCTTGGCTCTTGACGTCAGCCACAATAATCTGGCAGGCCATGTTCCTTCATGGATTTTTAAGATGGGCGTGCAAAGCATCTCTTTTTCTGGGAATGGCTTCAGCAAGAGCAATTATCCTGCACTTAAGTCCACTCCTACATCTTATCATGGTCTTGAGGTTTTAGATTTGTCATTCAATGCATTTTCTGGTGGTCTTCCATCTGACATTGGAGGACTTAGTAGCCTACAAGTCTTGAATATTTCCACTAACAATATCTCCGGTTCTATTCCTGTGGGTATAGGAGAGCTTAAGTCTTTGTACATTATTGACCTAAGTGACAACAAGCTTAATGGAAGCATTCCTTCTGAAATAGAAGGGGCGGTTTCACTCAGTGAGCTAAGGCTGCAAAAGAACTTCCTCGGTGGGAGAATTCCAGCCCAAATTGACAAGTGTTCATCTCTAACATTTTTGATTCTTTCTCACAACAAGCTTACTGGTTCAATCCCTGCAACCATTGCAAACCTCACCAATCTTCAATATGTAGATTTGTCATGGAATGAACTCTCTGGTAGTTTACCCAAGGAATTAACACTTCTTTCTCATCTTTTCACATTTAATGTGTCCTACAACCACCTTGAAGGTGAACTACCTGTGGGTGGCTTCTTCAACACCATCTCCTCCTCATCAGTATCCGGTAACTCATTGCTGTGCGGTTCTGTTGTCAACCACTCCTGTCCATCTGTTCATCCCAAACCTATTGTCCTGAACCCCAATTCTTCAGGTTCCAACTCCAGCATTTCTTCACAGAACCATCGGCATAAAATCATACTAAGTATCTCTGCTCTTATTGCTATTGGAGCAGCTGCTTTTATTGCCATTGGTGTGGTAGCTGTTACTGTCCTAAATATCCACGTGCGTTCCTCAATGCAACGTATGCCTGCTACATTTGCATTTTCTGGTGGTGAGGACTGTACTGGTTCGCCTGCAAATGATCCAAACTATGGCAAGCTTGTCATGTTTTCTGGTGATGCAGACTTCGCTGATGGAGCACATAATCTTCTCAATAAAGAAAGTGAAATAGGCCGTGGAGGATTTGGAGTTGTTTATCGCACTTTCCTTCGTGATGGACATGCTGTTGCAATCAAGAAGCTTACAGTCTCCAGTTTGATCAAGTCCCAAGAAGACTTTGAGAGAGAAGTAAAAAAGCTTGGAAATATCAGGCACTCGAATCTTGTCGCACTTGAAGGTTATTATTGGACTTCATCCTTGCAACTCCTTATTTATGAGTTCCTATCCACAGGGAGTTTGCATAAACTTCTGCACGATGATAACAGCAAAACTGTCTTCTCATGGCCACAAAGGTTCAAGATTATTCTTGGCATGGCAAAAGGGTTGGCCCATTTGCACCAAATGAACATAATTCACTACAATCTTAAATCAACCAATGTTCTTATTGATTGTTCTGGTGAGCCAAAGGTTGGAGATTTTGGCTTGGTGAAACTATTACCAATGTTAGACCATTGTGTTTTGAGCAGCAAAATTCAAAGTGCACTAGGATACATGGCGCCTGAGTTTGCATGTCGCACCGTTAAGATAACCGAGAAGTGTGACATATATGGTTTTGGGATCCTTGTGCTGGAGGTGGTGACAGGAAAAAGACCTGTGGAATACATGGAGGACGATGTGGTGGTTCTTTGTGACATGGTGAGGGGTGCATTGGAAGAAGGCAAGGTGGATCAATGTGTTGATGGAAGGCTCCTTGGTAACTTTGCTGCAGAGGAAGCAATTCCTGTGATAAAATTGGGGTTGATTTGTGCCTCACAAGTGCCATCAAACCGTCCAGATATGGCTGAGGTAGTCAACATACTAGAATTAATCCAATGCCCTTCAGAAGGACTAGAGGAATTAGGATGA 3111 0.4368 MEMEYVFGGEVFVKCPKPPATLEARVGGRVCLLAACNTPEKVTPVFKYSSSNHPSYCATVSRVKKKLPLLFVSMCALFLVLLAPVMFVISVDPGFNDDVLGLIVFKAGLEDPKRKLSSWNEDDNSPCNWEGVKCDPSSNRVTALVLDGFSLSGHVDRGLLRLQFLQILSLSRNNFTGPINPDLPRLGSLQAVDFSDNNLSGEIPEGFFQQCGSLRIVSFAKNNLTGKIPESLSSCSNLATVNFSSNQLHGELPNGVWFLRGLQSLDLSDNLLEGEIPQGIQNLFDMRELSLQKNRFSGRLPGDIGGCLLLKSLDLSGNFLSGELPQSMQRLTSCTALSLQGNSLTGGIPDWIGELKNLETLDLSANGFSGWIPKTLGNLDSLHRLNLSRNQLSGNLPDSMLNCTKLLALDVSHNNLAGHVPSWIFKMGVQSISFSGNGFSKSNYPALKSTPTSYHGLEVLDLSFNAFSGGLPSDIGGLSSLQVLNISTNNISGSIPVGIGELKSLYIIDLSDNKLNGSIPSEIEGAVSLSELRLQKNFLGGRIPAQIDKCSSLTFLILSHNKLTGSIPATIANLTNLQYVDLSWNELSGSLPKELTLLSHLFTFNVSYNHLEGELPVGGFFNTISSSSVSGNSLLCGSVVNHSCPSVHPKPIVLNPNSSGSNSSISSQNHRHKIILSISALIAIGAAAFIAIGVVAVTVLNIHVRSSMQRMPATFAFSGGEDCTGSPANDPNYGKLVMFSGDADFADGAHNLLNKESEIGRGGFGVVYRTFLRDGHAVAIKKLTVSSLIKSQEDFEREVKKLGNIRHSNLVALEGYYWTSSLQLLIYEFLSTGSLHKLLHDDNSKTVFSWPQRFKIILGMAKGLAHLHQMNIIHYNLKSTNVLIDCSGEPKVGDFGLVKLLPMLDHCVLSSKIQSALGYMAPEFACRTVKITEKCDIYGFGILVLEVVTGKRPVEYMEDDVVVLCDMVRGALEEGKVDQCVDGRLLGNFAAEEAIPVIKLGLICASQVPSNRPDMAEVVNILELIQCPSEGLEELG 1036
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00891 1036 Pfam Protein kinase domain 754 960 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst1g00891 1036 Pfam Leucine rich repeat 552 611 IPR001611 GO:0005515
Spst1g00891 1036 Pfam Leucine rich repeat 357 416 IPR001611 GO:0005515
Spst1g00891 1036 ProSitePatterns Protein kinases ATP-binding region signature. 759 782 IPR017441 GO:0005524
Spst1g00891 1036 Pfam Leucine rich repeat N-terminal domain 96 135 IPR013210 -
Spst1g00891 1036 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 259 1023 - -
Spst1g00891 1036 ProSiteProfiles Protein kinase domain profile. 753 1025 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst1g00891 1036 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 747 829 - -
Spst1g00891 1036 Pfam Leucine Rich Repeat 262 283 IPR001611 GO:0005515
Spst1g00891 1036 Pfam Leucine Rich Repeat 310 330 IPR001611 GO:0005515
Spst1g00891 1036 SUPERFAMILY L domain-like 355 629 - -
Spst1g00891 1036 Gene3D Ribonuclease Inhibitor 256 351 IPR032675 -
Spst1g00891 1036 Gene3D Phosphorylase Kinase; domain 1 743 829 - -
Spst1g00891 1036 FunFam Putative LRR receptor-like serine/threonine-protein kinase IRK 96 374 - -
Spst1g00891 1036 SUPERFAMILY L domain-like 113 443 - -
Spst1g00891 1036 Gene3D Ribonuclease Inhibitor 356 647 IPR032675 -
Spst1g00891 1036 CDD STKc_IRAK 759 1025 - -
Spst1g00891 1036 SUPERFAMILY Protein kinase-like (PK-like) 754 1026 IPR011009 -
Spst1g00891 1036 SMART LRR_typ_2 355 378 IPR003591 -
Spst1g00891 1036 SMART LRR_typ_2 478 502 IPR003591 -
Spst1g00891 1036 SMART LRR_typ_2 186 210 IPR003591 -
Spst1g00891 1036 SMART LRR_typ_2 379 403 IPR003591 -
Spst1g00891 1036 SMART LRR_typ_2 574 597 IPR003591 -
Spst1g00891 1036 SMART LRR_typ_2 259 282 IPR003591 -
Spst1g00891 1036 SMART LRR_typ_2 598 622 IPR003591 -
Spst1g00891 1036 SMART LRR_typ_2 283 307 IPR003591 -
Spst1g00891 1036 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 830 1031 - -
Spst1g00891 1036 Gene3D Transferase(Phosphotransferase) domain 1 830 1031 - -
Spst1g00891 1036 FunFam Putative LRR receptor-like serine/threonine-protein kinase IRK 375 648 - -
Spst1g00891 1036 Gene3D Ribonuclease Inhibitor 96 255 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00891 Spst-Chr1 11225866 11234847 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00891 72 1033 Receptor kinase-like Gene Family AT5G01890 62.293 0.0 1135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-1 Spst1g00891 Pkinase 5.6e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00891 - - gmx:100790365 1738.01