Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00883 ATGACGCAACGGCGGTTTCTGGAGACACAGCTGAGCATGCCACCGTCGTACGGCAACAACACGCGCGACACGTTCATCAGCGACGCCAACTTCGACACCAACATGGTGATCATTCTGGCGGCGCTGCTGTGCGCGCTGTTATGCGCGCTGGGGTTGAACTCCATCGCGCGGTGCGCGCTGCGGTGCGGGCGGCGTTTCGGCGATGAGACGCCGGAGCAGGCGGCGGCGCGCTTAGCGGGGACGGGGCTGAAGCGGCGCGAGCTCAGCCGCATCCCGGTGGCGGTGTACGGAGCCTCCGGCGAGACCATACCGGCGACGGAGTGCCCCATATGCCTCGGGGAGTTCGAGAAAGGGGACAGGGTCCGAATGCTGCCAAAGTGCAACCACGGCTTCCACGTGCAATGCATTGACACGTGGCTCCTCTCCCACTCCTCCTGCCCCAACTGCCGCCACTCCCTCCTCGAGAAACCCGCCGCGCCGGAGAGTGGGACCCGCCCGCGCAGCGACATCGTTGTGGTGGTGGAGCCGCTGAGTTGA 537 0.6629 MTQRRFLETQLSMPPSYGNNTRDTFISDANFDTNMVIILAALLCALLCALGLNSIARCALRCGRRFGDETPEQAAARLAGTGLKRRELSRIPVAVYGASGETIPATECPICLGEFEKGDRVRMLPKCNHGFHVQCIDTWLLSHSSCPNCRHSLLEKPAAPESGTRPRSDIVVVVEPLS 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00883 178 SUPERFAMILY RING/U-box 101 157 - -
Spst1g00883 178 ProSiteProfiles Zinc finger RING-type profile. 108 150 IPR001841 -
Spst1g00883 178 Pfam Ring finger domain 107 150 IPR001841 -
Spst1g00883 178 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 83 158 IPR013083 -
Spst1g00883 178 CDD RING-H2_EL5-like 107 150 - -
Spst1g00883 178 SMART ring_2 108 149 IPR001841 -
Spst1g00883 178 SMART FANCL_C_2 104 157 - -
Spst1g00883 178 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 25 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00883 Spst-Chr1 11180224 11180760 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00883 4 174 C3H Transcription Factor Family AT3G10910 53.631 8.85e-58 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00883 - K19040 gmx:100814602 305.834
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g00883 1 11180224 11180760 Spst1g00883 1 11180224 11180760 ECH