Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00871 ATGGGTAACTACAGGTTCAAACTATCTGATATGATCCCCAATGCCTGGTTTTACAAACTCAAGGACATGGGAAAAGCAAGAAGGCAAACCCCAACTCAGTCCAGGAAGAAAAAACAAACTTCACCAGCCTCAACCACACAACCATCAAAACCAAAGCAACCCCACCAATTCAATCCCAGAAAGTCTTACTACTTCACAAGGGAGCTTAACCCAAGTGATAGAATCTACACCTCACCAACAAATAACCCAAATGCCAAATACAATATTTCCCCTGAAGCTCCCAGAAAATCCTCCAAACAAAGACTCAAGAGAAGAACTGCAAGGACTTCTTCACCTAAGCTTGCTGTTGTCCCTGATAATAACAACTCCCCGTCACCACATGATAGCTCTGCTGAATCAGAGTACCCTGACCCAGAATTCAGAACAGACCGTGTTCTTGCCACTGAATCATTAGATGAAACGGTTCCTTGGTCCAACTCTTGCGTCTGCAAGCTACACTCCAACGCCAAGGACATCATCATTGATGTAGATAACAATTCCATAGACAGAAAAGATGATAAGCTAGAAGGGTATGAATATGATTCCTTCTCAGACCTTGTGCTTCCACCAATTGTGACCAAGCCTGCAAAATTCGATGTCTTGCTTAGTGATGCTAAGAAGAAAGAAACCAAAACCAAAACCAAATTGGGTGCACAAGAAGAACCAAACCTGAAGGGATCTCTGAGAGTTAAAATTATGAAGGAAGACACTGCACCAATGAAGGAACAAAAGAACACCCCTGGTAGGAGATTCTCTGTGAGTTCTTCTCCAGGAGTGAGGCTTCGGATGAACTCCCCGCGTATTGCAAGCCGGAAAATTCAGGCACATGGCCGGAGAAGCGTGTCCGCAGCCAGCTCCGGCTCCCGGAGAAGCCTGTCGGATAGCTTTGCAATTGTGAAGTCATCACTGAATCCACAGAGGGATTTCAGAGAATCAATGGTGGAGATGATTGTGCAGAACAACATAAGGACATCAAAGGATTTGGAGGATCTTCTTGCTTGCTATCTTAGTCTTAATTCAGATGAGTATCATGACCTCATTATCAATGTGTTCAAGCAAATATGGTTTGATTTAACTGATAATTAG 1125 0.4356 MGNYRFKLSDMIPNAWFYKLKDMGKARRQTPTQSRKKKQTSPASTTQPSKPKQPHQFNPRKSYYFTRELNPSDRIYTSPTNNPNAKYNISPEAPRKSSKQRLKRRTARTSSPKLAVVPDNNNSPSPHDSSAESEYPDPEFRTDRVLATESLDETVPWSNSCVCKLHSNAKDIIIDVDNNSIDRKDDKLEGYEYDSFSDLVLPPIVTKPAKFDVLLSDAKKKETKTKTKLGAQEEPNLKGSLRVKIMKEDTAPMKEQKNTPGRRFSVSSSPGVRLRMNSPRIASRKIQAHGRRSVSAASSGSRRSLSDSFAIVKSSLNPQRDFRESMVEMIVQNNIRTSKDLEDLLACYLSLNSDEYHDLIINVFKQIWFDLTDN 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00871 374 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 125 372 IPR038933 GO:0045892
Spst1g00871 374 Pfam DNA-binding domain 1 41 IPR025830 GO:0003677
Spst1g00871 374 Pfam Transcriptional repressor, ovate 315 371 IPR006458 -
Spst1g00871 374 MobiDBLite consensus disorder prediction 113 130 - -
Spst1g00871 374 NCBIfam uncharacterized plant-specific domain TIGR01568 310 372 IPR006458 -
Spst1g00871 374 MobiDBLite consensus disorder prediction 24 139 - -
Spst1g00871 374 ProSiteProfiles OVATE domain profile. 311 370 IPR006458 -
Spst1g00871 374 MobiDBLite consensus disorder prediction 253 272 - -
Spst1g00871 374 MobiDBLite consensus disorder prediction 35 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00871 Spst-Chr1 11065899 11067023 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Spst1g00871 Ovate 4.1e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00871 - - gmx:100794572 575.859