Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00846 ATGGCAGATCCTGCTGATTATAAGAGTCTTGAACGTGATATTGAGCAAACACTTGCTGCCTTGAAGAAAGGGACCCAATTGATAAAGTACAGTCGAAAAACGAAGCCAAAAGTCTGCGAATTCAGACTTTCTCTGATATGCAAAGACAGAGATGAGACAGAGACATGGTTTAAAGGCCTTCAGACATTAATTTCCGAAGAAAAGTTTAACAGCCGCATTGAAAGTCAACTTTTTTATGATGATGTTGATTTTATCCAACATGGTCATCCTTTCGCTACAGCACTAGGATTTGTCATAAACATTAGTAACAAGGTCTCTTTGGATTTGGCTTCTGACGAGTCTTCATTGAATTTGTTAAGTACATATGTGGGGTTAGAGGGTGATAATATGCAACCAAGAACAAGTATTGGAGATAGTTTTCGTGTGAGTGTGTCAAGTGCACCCAGTGTTTCAAGTGCAGGATCAGGACCAGATGACATAGAATCACTAGGTGATGTTTATGTATGGGGAGAGGTTTGGGCAGATGGGGTTTCACCTGATGGATTTGTTACTCAAGTTCCTTCCACAACAGATGTATTGATTCCTAAGCCATTAGAGTCAAGTGTTGTTCTTGATGTTCAACAAATTGCATCTGGCACGCGACACATTGCTCTGGTTACAAGGCAAGGGGAGGTTTTTACATGGGGAGAAGAATCTGGGGGAAGACTTGGTCATGGAACTGATAAAGATTTTGGACGCCCTCATCTTGTTGAGTTTTTGGCAGTTACTAACATGGATTTTGTTGCTTGTGGAGAGAATCATACATGCGCTGTGTCTACATCTGATGATCTTTTCTCATGGGGTGATGGTACATATAATGTTGGACTTCTTGGACATGGAACTGATGTTAGCCATTGGATACCAAAGAAGGTTTGTGGTCCTCTAGAAGGACTTCAAGTTATATCTATAGCATGTGGCACATGGCATTCAGCATTGGCAACTTCTAATGGAAAACTTTTTACCTTTGGTGATGGAACATTTGGCGTCTTGGGTCATGGAAATAGACAAAGTGTATCATATCCAAAAGAGGTGCAATTATTAAGTGGATTGAAAACTATTAAGGTTTCGTGTGGAGTATGGCATACTGCAGCTATTGTAGAAGTTACTTTTCAATCTGGTTCAAATGTCTCATCCAGAAAGCTTTTCACTTGGGGAGATGGTGACAAATATCGTCTGGGACATGGAAATAAGGAAACATACCTTCAACCCACTTGTGTCTCTACACTAATTGAATATAATTTCCACCAAATAGCATGTGGACACACTATGACTGTTGCCCTTACTACATCTGGTCATATCTTTACTATGGGAAACTCTGAAAATGGTCAATTAGGAAATCCTTTAGTTGATGGAAAAGTACCTATCCTAGTACAAGATAAGTTAGTGGGTGAATTTGTGGAGGAAATATCATGTGGATCTCATCATGTTGCAGCCTTAACATCAAGAAGTGAACTATACACATGGGGCAAAGGTGCTAATGGTAGATTGGGACATGGAGACATAGAAGATAGAAAATCCCCGACATTAGTGGAATCCTTGAAGGATAGACACGTAAAAAATATTTCATGTGGCTCAAACTTTACATCTTGCATATGCATTCATAAATGGGTCTCTGGAGTTGACCAATCTATTTGTACTGGTTGCAGACAACCATTTGGTTTCACTAGAAAGAGACATAATTGTTATAATTGTGGATTAGTGCACTGTCATGGTTGTAGTTCAAGAAAGGTACTAAAAGCAGCATTAGCTCCAACACCAGGAAAACCCCATCGTGTGTGTGACTCTTGTTATAATAAACTCAAAGCTGTTGAGGCATCTGCTTCTTCAAGTCTTCACAGAAAAGCTACTACTGCACCTCGCACTTCCATAGATGCCAGAGAGAGATTCGGCCAAGGAGAAATGAAGTCTTCAAGACTTATTCTGCCTCCTGTCACAGAACCAATAAAATATCATCAGATGATGACTAATAAGTTTGGAGGAAAATATGATTATTCTTCCATGTCTCCATCTTCCCAAATTCCATCACTTCTACAATTGAATGATATTGCATTTCCAAACTCAATAAATTCCTCTCATCATGTTTTGAAGTCTGCTCTAACTCCTAATCCACCACTAAGTTCACCTCTCATTTCAAGACCATCATCTCCTTATTCAAGAAGGTCAAGCTCACCACGTTCTCGAACTTCGGGATTTTCTAGAAGTCTTATCGATAGTTTGAAGAAGACAAATGACCTTTTAAATCAAGACATTTCAAAATTGCAAAACCAGATACGAAATGTGAAGCAAAAACATGAAATAGAAATTGTAAAGCTTCAGAGAAATGTTAGGGAGGTTACCTCCTTAGCTGCAGTCGAATCTTCTAAGCGTAAAATCATGAAAGAGTTTTTCGAGTCTACCGTAAATCAGTTGAAGGAAATGACTGGGAAGCTGCCACCAGAAGTGTTAGATGATGAAAATTGGAAAACCATGCTTGCTGGAGCTGAAGACTTTTTAAGAGAAAATTCGGAATCTGAAACACCATGTATATCATCAAGTATGAAGTCTCGACAACAAAAGGTTCCTAATAGACTCGATTCAAATGGTAATTCTTCTAAATTGCGAGCACATAAAATAGGAGAAAATAATGAAATTGAAAGAGCTGGCTCATTACTGAAAGATGAAGGAAATGTTGAAAGCAACAACTCATCTTCATCAAACAATGAAGCATCAATGTCTTCACAACATTCTGTAAATGATTCAAAGTCCCAAGATTCTTCAAGGCCAAGTAAAGAAGGAGAATCGCAAGTCATTGAACAATTTGAACCTGGCGTATACGTGACGTTAATCGTGAAGTCTTCTGGTGTCAAGGTTTTCAAACGGGTTAGATTCAGTAAACGAAGGTTCCATGAACATCAAGCAGAAGATTGGTGGAACAAGAACAAAGATAGAGTGCTTAAGAAATACAGTACTTTACAAGCTACAAAATCACAAGGTATTCGGTCATGTAACACTCTACGGATACTGTCAACACCACCACTGCCGCCACCCCCGCCGTCATCCGATGCAGAAGAACATATTGAGGCTACATCCTCCTAA 3114 0.3921 MADPADYKSLERDIEQTLAALKKGTQLIKYSRKTKPKVCEFRLSLICKDRDETETWFKGLQTLISEEKFNSRIESQLFYDDVDFIQHGHPFATALGFVINISNKVSLDLASDESSLNLLSTYVGLEGDNMQPRTSIGDSFRVSVSSAPSVSSAGSGPDDIESLGDVYVWGEVWADGVSPDGFVTQVPSTTDVLIPKPLESSVVLDVQQIASGTRHIALVTRQGEVFTWGEESGGRLGHGTDKDFGRPHLVEFLAVTNMDFVACGENHTCAVSTSDDLFSWGDGTYNVGLLGHGTDVSHWIPKKVCGPLEGLQVISIACGTWHSALATSNGKLFTFGDGTFGVLGHGNRQSVSYPKEVQLLSGLKTIKVSCGVWHTAAIVEVTFQSGSNVSSRKLFTWGDGDKYRLGHGNKETYLQPTCVSTLIEYNFHQIACGHTMTVALTTSGHIFTMGNSENGQLGNPLVDGKVPILVQDKLVGEFVEEISCGSHHVAALTSRSELYTWGKGANGRLGHGDIEDRKSPTLVESLKDRHVKNISCGSNFTSCICIHKWVSGVDQSICTGCRQPFGFTRKRHNCYNCGLVHCHGCSSRKVLKAALAPTPGKPHRVCDSCYNKLKAVEASASSSLHRKATTAPRTSIDARERFGQGEMKSSRLILPPVTEPIKYHQMMTNKFGGKYDYSSMSPSSQIPSLLQLNDIAFPNSINSSHHVLKSALTPNPPLSSPLISRPSSPYSRRSSSPRSRTSGFSRSLIDSLKKTNDLLNQDISKLQNQIRNVKQKHEIEIVKLQRNVREVTSLAAVESSKRKIMKEFFESTVNQLKEMTGKLPPEVLDDENWKTMLAGAEDFLRENSESETPCISSSMKSRQQKVPNRLDSNGNSSKLRAHKIGENNEIERAGSLLKDEGNVESNNSSSSNNEASMSSQHSVNDSKSQDSSRPSKEGESQVIEQFEPGVYVTLIVKSSGVKVFKRVRFSKRRFHEHQAEDWWNKNKDRVLKKYSTLQATKSQGIRSCNTLRILSTPPLPPPPPSSDAEEHIEATSS 1037
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00846 1037 FunFam PH, RCC1 and FYVE domains-containing protein 1 135 383 - -
Spst1g00846 1037 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 275 329 IPR000408 -
Spst1g00846 1037 SMART fyve_4 546 615 IPR000306 GO:0046872
Spst1g00846 1037 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 561 620 IPR013083 -
Spst1g00846 1037 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 223 274 IPR000408 -
Spst1g00846 1037 ProSiteProfiles BRX domain profile. 940 995 IPR013591 -
Spst1g00846 1037 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 330 381 IPR000408 -
Spst1g00846 1037 SUPERFAMILY RCC1/BLIP-II 163 549 IPR009091 -
Spst1g00846 1037 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 496 547 IPR000408 -
Spst1g00846 1037 Pfam Transcription factor regulating root and shoot growth via Pin3 940 994 IPR013591 -
Spst1g00846 1037 MobiDBLite consensus disorder prediction 621 642 - -
Spst1g00846 1037 Gene3D - 141 389 IPR009091 -
Spst1g00846 1037 Gene3D - 390 560 IPR009091 -
Spst1g00846 1037 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 444 495 IPR000408 -
Spst1g00846 1037 CDD FYVE_like_SF 558 610 - -
Spst1g00846 1037 MobiDBLite consensus disorder prediction 900 939 - -
Spst1g00846 1037 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 552 614 IPR017455 -
Spst1g00846 1037 MobiDBLite consensus disorder prediction 844 941 - -
Spst1g00846 1037 MobiDBLite consensus disorder prediction 882 898 - -
Spst1g00846 1037 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 368 378 IPR000408 -
Spst1g00846 1037 PRINTS Chromosome condensation regulator RCC1 signature 316 332 IPR000408 -
Spst1g00846 1037 PRINTS Chromosome condensation regulator RCC1 signature 275 291 IPR000408 -
Spst1g00846 1037 PRINTS Chromosome condensation regulator RCC1 signature 433 451 IPR000408 -
Spst1g00846 1037 PRINTS Chromosome condensation regulator RCC1 signature 332 346 IPR000408 -
Spst1g00846 1037 PRINTS Chromosome condensation regulator RCC1 signature 225 241 IPR000408 -
Spst1g00846 1037 PRINTS Chromosome condensation regulator RCC1 signature 491 512 IPR000408 -
Spst1g00846 1037 SUPERFAMILY FYVE/PHD zinc finger 548 622 IPR011011 -
Spst1g00846 1037 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 209 219 IPR000408 -
Spst1g00846 1037 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 392 443 IPR000408 -
Spst1g00846 1037 Coils Coil 749 794 - -
Spst1g00846 1037 Pfam FYVE zinc finger 548 614 IPR000306 GO:0046872
Spst1g00846 1037 MobiDBLite consensus disorder prediction 1013 1037 - -
Spst1g00846 1037 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 42 808 - -
Spst1g00846 1037 Pfam Regulator of chromosome condensation (RCC1) repeat 276 325 IPR000408 -
Spst1g00846 1037 Pfam Regulator of chromosome condensation (RCC1) repeat 443 492 IPR000408 -
Spst1g00846 1037 Pfam Regulator of chromosome condensation (RCC1) repeat 497 544 IPR000408 -
Spst1g00846 1037 Pfam Regulator of chromosome condensation (RCC1) repeat 223 271 IPR000408 -
Spst1g00846 1037 Pfam Regulator of chromosome condensation (RCC1) repeat 394 440 IPR000408 -
Spst1g00846 1037 Pfam Regulator of chromosome condensation (RCC1) repeat 329 378 IPR000408 -
Spst1g00846 1037 MobiDBLite consensus disorder prediction 712 746 - -
Spst1g00846 1037 MobiDBLite consensus disorder prediction 849 881 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00846 Spst-Chr1 10786029 10791680 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00846 937 995 Major Intrinsic Protein MIP AT1G31880 35.593 1.09e-07 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00846 - - gmx:100779684 1488.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g00846 1 10786029 10791680 Spst4g00878 4 36948840 36950289 PCT