Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00816 ATGGGAGGCTGTTGCAGCCACGATGTTTCGGTTCGAGGGAAGGTGGAAAGTGAGGTGGATGATAGAGATTATGAGTATGATCATGAAAATGATATTGCTTATGAACATGGTGGAGCATTGGTGAGGTTAAGAGGATCCTCTAAGTTTGTTTCAATGTACACCCAACAGGGCCAGAAAGGTGTGAACCAAGATGCAATGACAGTTTGGGAGGACTTCACTGGAGAAAAGGATGTGATCTTTTGCGGTGTGTTTGATGGTCATGGTCCTCTCGGCCACAAGGTTTCACAATTTATTCGTGACAATCTACCCTCAAAACTGTCTGCAGCGATCGAAATTTCGCAACAGAAGACAATAAAATATTATGATGCCAATGAAACAGAAACTGCCAGTTTTGATGATGGCTACGATGACAGTAACCATAACATGTCCCTTGCATCATGGGAGGGATGCTTTCTGAAATCCTTTGATGAGATGGATGAGTACCTTGCTCGGGAAATTAACACTGACAGCTATTGCAGTGGTTGCACCGCTGTGACTTTAATTAAACAGGGTGACCAGCTGATAGTTGGCAATTTGGGTGATTCTCGTGCAGTTCTTTGCACAAGGGACAGGGGCCAACTCATTCCTGTTCAACTCACTGTTGACTTGAAACCAGAAATTCCAAGCGAAACCTCAAGAATAGTTAACTGTGAAGGAAGAGTGTTTGCAGCAGAAGAAGAACCAGATGTGTACAGAATATGGATGCCTGATGATGACTGCCCTGGTCTAGCCATGTCAAGAGCCTTCGGGGACTTTTGCCTCAAACACTATGGCCTCATCTCAGTTCCTGATGTATTTTACAGAAAAATTATCCCACAAGATCAATTTGTGGTTTTGGCAACTGACGGGATATGGGATGTGCTCACTAACCAAGAAGTAGTAAGCATAGTTGCTTCAGCACCAAGGAGGTCCATCGCAGCCAAGTTGTTAATAAAGCGTGCTGTAAGAGCCTGGAGATACAAGTATCCTGGTTCCAGGGTTGATGATTGTGCTGCCATTTGCTTGTTTCTGGATGAACAACCTGTTCTATCCCATTCACAGTCCCAGATGAGTAGAAAAAATAGACCGCGTAGCAAGCACGTGCATCGCTCTAGTAGAAATGAAGACACGGATACAGTGGATGGCAAGGTTGGAATGGAAATAGATGAAGAATGGAAAGCTCTCGGAGGGTTTGCAAGAGCCAACTCTATATCAAAACTTCCACGCCTTGCTAGGGCTATGAGTAATCGCCAATCGACCAAGTACTATTCACCGCGTTGA 1299 0.4457 MGGCCSHDVSVRGKVESEVDDRDYEYDHENDIAYEHGGALVRLRGSSKFVSMYTQQGQKGVNQDAMTVWEDFTGEKDVIFCGVFDGHGPLGHKVSQFIRDNLPSKLSAAIEISQQKTIKYYDANETETASFDDGYDDSNHNMSLASWEGCFLKSFDEMDEYLAREINTDSYCSGCTAVTLIKQGDQLIVGNLGDSRAVLCTRDRGQLIPVQLTVDLKPEIPSETSRIVNCEGRVFAAEEEPDVYRIWMPDDDCPGLAMSRAFGDFCLKHYGLISVPDVFYRKIIPQDQFVVLATDGIWDVLTNQEVVSIVASAPRRSIAAKLLIKRAVRAWRYKYPGSRVDDCAAICLFLDEQPVLSHSQSQMSRKNRPRSKHVHRSSRNEDTDTVDGKVGMEIDEEWKALGGFARANSISKLPRLARAMSNRQSTKYYSPR 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00816 432 SUPERFAMILY PP2C-like 46 352 IPR036457 -
Spst1g00816 432 Gene3D - 44 352 IPR036457 -
Spst1g00816 432 CDD PP2Cc 49 350 IPR001932 -
Spst1g00816 432 PANTHER PROTEIN PHOSPHATASE 47 348 IPR015655 GO:0004722|GO:0006470
Spst1g00816 432 SMART PP2C_4 40 348 IPR001932 -
Spst1g00816 432 ProSiteProfiles PPM-type phosphatase domain profile. 49 350 IPR001932 -
Spst1g00816 432 MobiDBLite consensus disorder prediction 359 388 - -
Spst1g00816 432 Pfam Protein phosphatase 2C 69 326 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00816 Spst-Chr1 10376490 10379238 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00816 1 354 PP2C-type Phosphatase Gene Family AT5G01700 52.825 5.71e-133 386
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00816 - - vun:114185420 798.119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g00816 1 10376490 10379238 Spst1g00816 1 10376490 10379238 ECH
Spst1g00816 1 10376490 10379238 Spst4g00887 4 37385672 37390084 PCT