Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00803 ATGAAACAATTCCAGCCACGTGTCACAACCCTAGCAGCTCATCAGCCTCACCATCAGCATGTAAAAAAGTGCCACGTCATCATCAGGGAGAGGAAATCACGCAAGAGACGCAGTAGTGGAAGTGATTCTGTGGAAAACACTCTTGAAAAGTGGAAGGAGTATAACAGGCAGCAACAACTTGGTTTAAGAGAAAATGGTGTGGAAGTGATTCACAAAGTTCCTGCAAAAGGGTCGAGAAAAGGGTGCATGAGAGGTAAGGGAGGACCTCAGAACTCCGATTGCAAGTTTCGAGGTGTGCGGCAGAGAATTTGGGGGAAATGGGTTGCTGAGATTCGTGAACCAATCAATGGCAAGATTGTGGGTGAGAAAGCAAACAGGCTTTGGCTTGGTACTTTCTCCACTGCACTTGAAGCGGCTATTGCTTATGATGAAGCTGCTAAGGCCATGTATGGCCCCTGTGCCCGTTTGAATTTTCCTGAGCCTTCTGTAGATCCAATAGACTCTAATGGATCATCATCTAGTGGATCTGATGAAAAATCACCAAGTGGTTCTTCAGAGAATGACAGTGATGTTGCAAAAACTGAGTTGGAAAGGAACCGTCATCAGCCTCATGAAGAGAAGCCAAGGTTTTCTAAGGATTTTGTTTTTGAGGAAAAAGTAGAGAAACAGGTTCCTTCTGGAGGTTCTGTAACTGATGACTCAGTAGAGGAGTTGAAGGAAATGACAACTGGCTTTGAACAATGTCAAACAAGTGAAGAATGTATGGCAATAACTATGAAGAATGTTAAGTCTGAAGTACCTGAAGAAAGTGAAGGAATAGAGAGAGAATTGGAGAGGGTTTTGAAAAATTCTGGCTTAGGTGAAGAGAGTAATCACTTGCAGAAGGAGCCTGTGGACATAGCCATGAATACAAGAGCTAACTATTGCAGCTCTTCTGATGCTGCTGAACATGACATTGTGGTGAAAAGTGAAGGAACAAGAGGAGAATCAGTTGAAATTTTGAAATCATGTGAGTTAAGCTGCAGCAACCATGGCCTTGGATATATGCATAGCATGCTGCCAGATAGCAATCCAAGACCACATTCTGAGCATTTTAATAACACCCAAACTGAGGCATCTATAGCGAGGAAGCATACCGAGGAAGTAATTTCTGAAATCCTGGGGCTATGTCACGGCAAGTGCTTGAAGATTAGTCATGATGTGTCACCACATGAGCATTATAAAGCTGAACATTTTGATGAGATGAGAACAAAGCTTAAGTGTCTGGAATGCAAGTTCAGAGCACATTCTATTCACTACAAGAATCAGGAACCCACAGATGGGGATTCCAATTATCCTTCAATGCAAGGAATTCATATGTTCGGTGGTGGCACTGTAGGACCAATGGAAAGCATTTACCAAGTTGATGCTATGAACAACATCAACACAAACAGAAATTCACTACCTGGATTTAGTTCTGGGCATAGTAGGAAGTTGTGTGATCTTTCTCAACAGCTACACAAACTTGGTGGTTACCTTCCTGAGCATTGGAATAATATGCAGTGTGCAGACTTCGAAGTGGGTTATGATTATAGTTTCTTAAATCCAGATTATGATTTTGGCTTATTAGAAGAGCAGAAGTTACTTGATGTATGTTTTCCACAAATAGGATCTTAG 1656 0.4203 MKQFQPRVTTLAAHQPHHQHVKKCHVIIRERKSRKRRSSGSDSVENTLEKWKEYNRQQQLGLRENGVEVIHKVPAKGSRKGCMRGKGGPQNSDCKFRGVRQRIWGKWVAEIREPINGKIVGEKANRLWLGTFSTALEAAIAYDEAAKAMYGPCARLNFPEPSVDPIDSNGSSSSGSDEKSPSGSSENDSDVAKTELERNRHQPHEEKPRFSKDFVFEEKVEKQVPSGGSVTDDSVEELKEMTTGFEQCQTSEECMAITMKNVKSEVPEESEGIERELERVLKNSGLGEESNHLQKEPVDIAMNTRANYCSSSDAAEHDIVVKSEGTRGESVEILKSCELSCSNHGLGYMHSMLPDSNPRPHSEHFNNTQTEASIARKHTEEVISEILGLCHGKCLKISHDVSPHEHYKAEHFDEMRTKLKCLECKFRAHSIHYKNQEPTDGDSNYPSMQGIHMFGGGTVGPMESIYQVDAMNNINTNRNSLPGFSSGHSRKLCDLSQQLHKLGGYLPEHWNNMQCADFEVGYDYSFLNPDYDFGLLEEQKLLDVCFPQIGS 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00803 551 MobiDBLite consensus disorder prediction 164 189 - -
Spst1g00803 551 ProSiteProfiles AP2/ERF domain profile. 95 159 IPR001471 GO:0003700|GO:0006355
Spst1g00803 551 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 30 323 - -
Spst1g00803 551 MobiDBLite consensus disorder prediction 190 216 - -
Spst1g00803 551 MobiDBLite consensus disorder prediction 161 216 - -
Spst1g00803 551 Pfam AP2 domain 94 151 IPR001471 GO:0003700|GO:0006355
Spst1g00803 551 CDD AP2 94 160 IPR001471 GO:0003700|GO:0006355
Spst1g00803 551 Gene3D AP2/ERF domain 94 160 IPR036955 GO:0003700|GO:0006355
Spst1g00803 551 FunFam Ethylene-responsive transcription factor 2 94 160 - -
Spst1g00803 551 SMART rav1_2 95 165 IPR001471 GO:0003700|GO:0006355
Spst1g00803 551 MobiDBLite consensus disorder prediction 1 23 - -
Spst1g00803 551 PRINTS Ethylene responsive element binding protein signature 125 141 IPR001471 GO:0003700|GO:0006355
Spst1g00803 551 PRINTS Ethylene responsive element binding protein signature 96 107 IPR001471 GO:0003700|GO:0006355
Spst1g00803 551 SUPERFAMILY DNA-binding domain 95 159 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00803 Spst-Chr1 10269973 10272364 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00803 34 160 AP2-EREBP Transcription Factor Family AT2G40340 58.915 2.14e-42 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Spst1g00803 AP2 7.5e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00803 - - gmx:100500303 796.964