Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00777 ATGAGTATGGAAGAAGAGAGACATGACTCGGAATGTTCCAAGACAAGCCCTTCGAATGAAGAAGGTTGTGAAGAAAGTGATGAGGGGAATGAAGACGAGAGTAAGCAACACAACAATGGAGGAAGCTCAAGCAACAGCACTGTGGAAGAGAACGAGAAGAAGACAACAGTGAGGCCTTATGTTAGATCCAAGTTGCCTAGGCTACGTTGGACACCCGATCTTCATCTTCGCTTTGTTCATGCTGTTCAAAGACTTGGAGGACAAGAGAGAGCAACCCCAAAGTTGGTTCTTCAGTTGATGAATATCAAAGGTTTAAGTATTGCTCATGTCAAGAGTCATTTACAGAAGCAAGAAGGTAGACACAAATCAAGATATGGATATGGGGATGCTTCATTTGCTATCTATGAAAACACGGTGAACAGACCTTGCATGAATAGGAGTTCGGTAGATGAATCTGGAGCTGATATTTGTGGCAGCAGATTGACTGAGGGGACTCATGGGACCAATAGTAACATCAATTGGTGTCATAATGTGTTCCGGTTTGATTCTTCCAGTTTTAATGAACCGTCAACAAGTAAACTCCACGAACCAAAACATAAGTTCTTCTCATTTGGTGGCAATGAATCCTTAAGCACACAAATCAAAATGAGCCAAGATGATCTACATCAATCAACACAAATGCAGCCTAGTGCACCAGAGCTCATGCCAAAAAATAAGATAGCTACAAATCAGGTCGAACTAAAGAGCTTACAAAGGAAGAATTCAGATACTGACATTGATTTGAATCTGTCACTTAAATTAAGTTCAAGGGTCAGTGCTGAGGACCAAGGAAGCATGGTGGACCATGAAGTTGATAGCAATCTATCACTCTCTTTGTGTTCTCAATCCTCTTCCCCTTATCTTAGCAGCAGGTTGAGAAAATCACAAGATCATTCGAAGAAGCAAGGGGGAAAAGCCAGAACATTGGATCTGACTATATGA 981 0.4149 MSMEEERHDSECSKTSPSNEEGCEESDEGNEDESKQHNNGGSSSNSTVEENEKKTTVRPYVRSKLPRLRWTPDLHLRFVHAVQRLGGQERATPKLVLQLMNIKGLSIAHVKSHLQKQEGRHKSRYGYGDASFAIYENTVNRPCMNRSSVDESGADICGSRLTEGTHGTNSNINWCHNVFRFDSSSFNEPSTSKLHEPKHKFFSFGGNESLSTQIKMSQDDLHQSTQMQPSAPELMPKNKIATNQVELKSLQRKNSDTDIDLNLSLKLSSRVSAEDQGSMVDHEVDSNLSLSLCSQSSSPYLSSRLRKSQDHSKKQGGKARTLDLTI 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00777 326 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 122 IPR017930 -
Spst1g00777 326 MobiDBLite consensus disorder prediction 1 21 - -
Spst1g00777 326 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 43 230 IPR046955 GO:0003700
Spst1g00777 326 MobiDBLite consensus disorder prediction 216 237 - -
Spst1g00777 326 MobiDBLite consensus disorder prediction 216 232 - -
Spst1g00777 326 MobiDBLite consensus disorder prediction 299 326 - -
Spst1g00777 326 Gene3D - 65 121 - -
Spst1g00777 326 NCBIfam myb-like DNA-binding domain, SHAQKYF class 66 116 IPR006447 GO:0003677
Spst1g00777 326 MobiDBLite consensus disorder prediction 1 60 - -
Spst1g00777 326 Pfam Myb-like DNA-binding domain 68 116 IPR001005 -
Spst1g00777 326 MobiDBLite consensus disorder prediction 36 50 - -
Spst1g00777 326 SUPERFAMILY Homeodomain-like 65 118 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00777 Spst-Chr1 10083301 10084844 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00777 23 128 G2-like Transcription Factor Family AT2G42660 54.128 1.83e-29 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Spst1g00777 Myb_DNA-binding 6.9e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00777 - - gmx:102662997 460.299
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g00777 1 10083301 10084844 Spst1g00777 1 10083301 10084844 ECH
Spst1g00777 1 10083301 10084844 Spst4g01017 4 42167816 42171761 PCT