Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00774 ATGGAGTGCATCAACCCTACCTCTTGTGAAGGGTCATCTTCCAAGAACAAGAACAAGGAGAAAAAGGGTGTGAAGAAAGGCATCAAGGGAGGGGTGAAGCTTTCTACTGATCCACAAAGCGTGGCAGCCAGAGAAAGAAGGCACAGAATCAGTGACAGGTTCAAGATCCTTCAGAGCATGGTCCCTGGTGGTAGCAAGATGGACACAGTGTCCATGTTGGAAGGAGCCATTCACTACGTGAAGTTCCTCAAAACCCAGATTTGGCTCCACCAAACATTGATAAACTTTGTAGATATTGATCATGATGAGGCTCCCGTGTACCTCCCCCAAGAGCATAATTTCCCTCATGAACACTCCATTTCCCTTCAGCAAAACCCTTCTTCAGTTTCGGTGCATTCTCAGCAGAGTTTACCACAGCCACCACTAGCACAGTACTACTTCCAAGGTGAAGAAGATTGCAACACCTTTGATGCCACTATGAAATATTGGCCAGCTTAG 498 0.4659 MECINPTSCEGSSSKNKNKEKKGVKKGIKGGVKLSTDPQSVAARERRHRISDRFKILQSMVPGGSKMDTVSMLEGAIHYVKFLKTQIWLHQTLINFVDIDHDEAPVYLPQEHNFPHEHSISLQQNPSSVSVHSQQSLPQPPLAQYYFQGEEDCNTFDATMKYWPA 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00774 165 Gene3D - 35 91 IPR036638 GO:0046983
Spst1g00774 165 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 17 141 IPR045843 GO:0003700|GO:0006355
Spst1g00774 165 SMART finulus 40 89 IPR011598 GO:0046983
Spst1g00774 165 FunFam Transcription factor LAX PANICLE 37 102 - -
Spst1g00774 165 CDD bHLH_AtIND_like 35 94 - -
Spst1g00774 165 MobiDBLite consensus disorder prediction 1 38 - -
Spst1g00774 165 Pfam Helix-loop-helix DNA-binding domain 44 83 IPR011598 GO:0046983
Spst1g00774 165 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 41 112 IPR036638 GO:0046983
Spst1g00774 165 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 34 83 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00774 Spst-Chr1 10045179 10045676 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00774 24 112 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 45.652 2.91e-22 89.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Spst1g00774 HLH 1.2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00774 - - gmx:113000114 200.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g00774 1 10045179 10045676 Spst1g00774 1 10045179 10045676 ECH