Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00741 ATGGGCGTGGACTACTACAAGATTCTTCAGGTAGATAGGAGCGCCAAAGATGATGATATTAAAAAAGCATATCGAAGCCTGGCCATGAAGTGGCACCCTGATAAGAACCCTAACAACAAGAAAGACGCTGAAGCTAAATTCAAGCAAATCTCAGAAGCTTATGATGTCTTGAGTGATCCACAGAAGCGAGCAATGTATGATCAGTATGGTGAGGAGGGGTTGAATGGGGTGCCGCCTAGTGGCGGTGGTTTTCCGGGTGGCAGCGACGGTGGGCCGACAACATTCCGGTTCAATCCCAGAACTGCAGATGATATTTTTTCTGAGTTTTTCGGGTTTACGAGTCCCCTTGGTCGTGGTGGAATGGGGGATATGGGTGGTCGACCTGGATTTTCCAGGGGTGGCACGTTTGGTGAAGATATTTTTGCTCAATTTCGGAATGCAGCTGGGGAGGGCTCAGGCCATATGCCAAGGAAAGGGGCACCCATTGAAAGAACAGTACATTGTAGTTTGGAGGATTTGTATAAAGGGACTACCAAGAAAATGAAGATTTCAAGGGATGTTAGTGATGTCAATGGGAGACCCTCCACAGTAGAGGAAATCCTTACAATTGAGATCAAGCCAGGTTGGAAGAAAGGAACAAAAATAACATTTCCTGAAAAGGGAAATCAACAAAGAGGTGTTATCCCTGCAGACCTTGTATTCATCATCGATGAGAAGCCTCATAGCCTCTTTAAGAGGGATGGCAATGATCTTGTTGTCACCCAGAAAATATCTCTGGTTGAAGCCTTGACAGGTTACACAGTGCAGCTGATAACCCTTGATGGAAGGAATCTGACAATCCCAGTTAACAACACGATTAGCCCGACATACGAAGAAGTTGTGAAAGGAGAGGGTATGCCCCTTCCCAAAGAACCTTCCAAGAAGGGGAACTTGAGAATCAAGTTCAATATCAAGTTTCCCTCCAGGCTCACATCCGATCAGAAAAGTGGCATCAAGCGATTGAGTGGAGGAGGCACTTTAGCCTTATTGAGTACTACTTATACTAATACACATTCTTCAAGTTTTTATTTTTCCTCTATTTCTCCAACCTCTTTGATCAATTCCCATGGTCTTTCTCTCCAATTCCATTTAGCTTCTCCAAATCCCAAACCCCTACGCTTAGATCTCAATTGGGTTATGGACATGGCTTCCAGTCCCCGCACCGTTGAAGAGATCTTCAAGGACTATAGCGCCAGAAGAACCGCTGTTATTCGTGCTCTCACTCATGACGTTGATGAATTTTACGGGCTCTGCGATCCAGATAAGGATAACCTGTGCCTATATGGACATCCAAATGAGGCCTGGGAAGTAACTCTGCCAGCAGAGGAAGTTCCACCAGAGCTCCCTGAGCCAGCTCTTGGAATCAATTTTGCTAGGGATGGCATGAACCGTAGGGACTGGCTTTCTCTGGTTGCTGTGCACAGTGACTCATGGTTGGTTTCTGTGGCCTTTTACCTCGGGGCTCGCCTTAACCGCAATGAAAGGAAACGTTTGTTTAGTTTGATCAACGATCTCCCATCCGTTTTTGAAGTTGTGACTGAAAGGAAACCAATTAAGGACAAGCCCACCGTGGATAGTGGAAGCAAGTCTCGGGGAAGCACCAAGAGATCCAATGATGGGCAAGTTAAAAGCAACCCAAAGTTTGCTGCAGATGAGGGTTACGAGGAGGATGAAGATGAGCACAATGAAACACTCTGTGGAAGCTGTGGTGGAAATTACAATGCCGACGAGTTTTGGATTTGCTGCGACATATGTGAGAGGTGGTTCCATGGGAAGTGTGTTAAAATCACCCCTGCAAAGGCTGAGAGCATAAAGCATTGGTGTGGACATGGAGTGAACCATAGACATTATCGCCACCAATTGAATCATTCCCATGGGGACAAAGGAATAAACCAGAACACCAAAGACCCCAAAAGTAGTGGAATGGGTTCCTCTCGCTCACGTGGCTCTGCCACTGCCAAAGGACGCCTACGTTGGACTCAAGAACTCCATGATCGCTTTGTGGACGCTGTAAATAGACTAGGGGGCCCTGATAGTAAGTCCTTCGTTGCATGTCAAATCCTCATTTACTTGGAGTGGGGCAACACCAAAAGGTATATTGAAAGGAATGAAGGGAATGGGTATTTCAGAGCTAAGCATTTATCACGTCAAAAGTCACTTGCAGAAATACAGGATCTCCAAATTGATTCCAGAGTCTCCCACAATGCTCTTCAACTAAAGGAACTCCTTCAAATGCAGACAGAGATGCAAAATCGCATGAGTGATAAAACAGAGGTTCAGAGAAGTTTGAAGGTAAAAGTTGAAGCACAACGAAAGTACTTTGAGAGAATTGGACAAAGTAATCAAAGCAAGACAATAATTGGAAAATCAAGCAAGCCTTTTGCTTCTTCTACAACTGCACCCCTGCCTTCTCTTTATGAGGATTCTGAATCATTGAAGTCCCAAACTGAGGAAGAGCATCAATCAGCCAAAAAGCAAAGGACTTCAGAAGAGGGTGTTTTTCCAACAAGTTTTGAACATGCACCATCCACCCCACTAGAATTCTACAACCAAACATGGAATCTTCTTTGGAGTCAGCTTGCACCAGTATGCCAATCAACTTTGGAGCCCAGTTTCTTATTCTGA 2664 0.4512 MGVDYYKILQVDRSAKDDDIKKAYRSLAMKWHPDKNPNNKKDAEAKFKQISEAYDVLSDPQKRAMYDQYGEEGLNGVPPSGGGFPGGSDGGPTTFRFNPRTADDIFSEFFGFTSPLGRGGMGDMGGRPGFSRGGTFGEDIFAQFRNAAGEGSGHMPRKGAPIERTVHCSLEDLYKGTTKKMKISRDVSDVNGRPSTVEEILTIEIKPGWKKGTKITFPEKGNQQRGVIPADLVFIIDEKPHSLFKRDGNDLVVTQKISLVEALTGYTVQLITLDGRNLTIPVNNTISPTYEEVVKGEGMPLPKEPSKKGNLRIKFNIKFPSRLTSDQKSGIKRLSGGGTLALLSTTYTNTHSSSFYFSSISPTSLINSHGLSLQFHLASPNPKPLRLDLNWVMDMASSPRTVEEIFKDYSARRTAVIRALTHDVDEFYGLCDPDKDNLCLYGHPNEAWEVTLPAEEVPPELPEPALGINFARDGMNRRDWLSLVAVHSDSWLVSVAFYLGARLNRNERKRLFSLINDLPSVFEVVTERKPIKDKPTVDSGSKSRGSTKRSNDGQVKSNPKFAADEGYEEDEDEHNETLCGSCGGNYNADEFWICCDICERWFHGKCVKITPAKAESIKHWCGHGVNHRHYRHQLNHSHGDKGINQNTKDPKSSGMGSSRSRGSATAKGRLRWTQELHDRFVDAVNRLGGPDSKSFVACQILIYLEWGNTKRYIERNEGNGYFRAKHLSRQKSLAEIQDLQIDSRVSHNALQLKELLQMQTEMQNRMSDKTEVQRSLKVKVEAQRKYFERIGQSNQSKTIIGKSSKPFASSTTAPLPSLYEDSESLKSQTEEEHQSAKKQRTSEEGVFPTSFEHAPSTPLEFYNQTWNLLWSQLAPVCQSTLEPSFLF 887
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00741 887 CDD PHD_AL_plant 578 620 IPR044104 -
Spst1g00741 887 Pfam Alfin 401 526 IPR021998 GO:0006355|GO:0042393
Spst1g00741 887 MobiDBLite consensus disorder prediction 635 668 - -
Spst1g00741 887 MobiDBLite consensus disorder prediction 797 816 - -
Spst1g00741 887 MobiDBLite consensus disorder prediction 540 557 - -
Spst1g00741 887 MobiDBLite consensus disorder prediction 646 664 - -
Spst1g00741 887 CDD DnaJ_C 160 323 - -
Spst1g00741 887 ProSiteProfiles dnaJ domain profile. 4 70 IPR001623 -
Spst1g00741 887 SMART dnaj_3 3 62 IPR001623 -
Spst1g00741 887 Coils Coil 819 839 - -
Spst1g00741 887 Gene3D - 666 743 - -
Spst1g00741 887 FunFam Dnaj homolog subfamily b member 158 239 - -
Spst1g00741 887 MobiDBLite consensus disorder prediction 532 569 - -
Spst1g00741 887 Pfam PHD-finger 579 621 IPR019787 -
Spst1g00741 887 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 576 623 IPR013083 -
Spst1g00741 887 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 334 - -
Spst1g00741 887 SUPERFAMILY HSP40/DnaJ peptide-binding domain 244 329 IPR008971 GO:0006457|GO:0051082
Spst1g00741 887 MobiDBLite consensus disorder prediction 824 840 - -
Spst1g00741 887 Gene3D - 161 239 - -
Spst1g00741 887 FunFam DnaJ subfamily B member 13 3 121 - -
Spst1g00741 887 SUPERFAMILY HSP40/DnaJ peptide-binding domain 162 241 IPR008971 GO:0006457|GO:0051082
Spst1g00741 887 MobiDBLite consensus disorder prediction 822 852 - -
Spst1g00741 887 SUPERFAMILY Chaperone J-domain 3 115 IPR036869 -
Spst1g00741 887 Gene3D DnaJ domain 3 119 IPR036869 -
Spst1g00741 887 PRINTS DnaJ domain signature 6 24 IPR001623 -
Spst1g00741 887 PRINTS DnaJ domain signature 62 81 IPR001623 -
Spst1g00741 887 PRINTS DnaJ domain signature 24 39 IPR001623 -
Spst1g00741 887 PRINTS DnaJ domain signature 42 62 IPR001623 -
Spst1g00741 887 CDD DnaJ 4 59 IPR001623 -
Spst1g00741 887 Pfam DnaJ domain 4 67 IPR001623 -
Spst1g00741 887 FunFam DnaJ subfamily B member 13 241 321 - -
Spst1g00741 887 Gene3D - 241 321 - -
Spst1g00741 887 SUPERFAMILY FYVE/PHD zinc finger 567 620 IPR011011 -
Spst1g00741 887 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
Spst1g00741 887 FunFam PHD finger alfin-like protein 571 623 - -
Spst1g00741 887 Pfam DnaJ C terminal domain 162 320 IPR002939 -
Spst1g00741 887 Pfam MYB-CC type transfactor, LHEQLE motif 751 793 IPR025756 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00741 Spst-Chr1 9590824 9603444 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00741 396 620 Alfin-like Transcription Factor Family AT5G05610 75.221 4.03e-105 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Spst1g00741 DnaJ_C 1.3e-43 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00741 K09510 - gmx:100818358 585.104