Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00727 ATGGCAAATGAGAACGGTTCGTTGAACTCCAACCCAACAATGGACACCAGGGGAAAGACCATCACTTGCAAAGCTGCTGTGGCCTATGGTCCTGGAGAACCCTTCGTGGTGGAAGAAATTCTTGTTCATCCACCTCAGAAATTGGAGGTTCGAATCAAAATCCTCTACACGTCCATTTGCCACACCGATCTCAGCGCTTGGCGAGGCGAGAACGAGTCTCAGCGTGCTTACCCTCGCATCTTCGGGCATGAAGCATCCGGGATTGTGGAGAGTGTGGGAGAAGGGGTGAGTGAGGTGGAGGAAGGGGACGTGGTGGTGCCAATATTCCATGGGGAGTGTGGAGAGTGTTGCTATTGCAAGTGCGAGAAGAGCAACATGTGTGAGAGGCATGGGGTGAACCCCATGAAGAAGGTGATGGAAGATGGCACAAGCAGATTCTCCACAGTTGATGGAAAACCCATCTTCCATTTCTTGAACACCTCCACGTTCTCCGAGTACACGGTGGTCGACTCCGCCTGTGTCGTCAACTTTCATCGCTCCGATCACACTCTCGCCCTCAAAAACCTCACCTTGCTCAGCTGTGGCGTCTCCACAGGGGTTGGAGCTGCATGGAATACAGCAAATGTACAATCTGCTTCAACAGTGGCTATCTTTGGTTTAGGAGCTGTTGGCCTGGCTGTTGCAGAAGGGGCACGAGCCAGAGGCGCCTCTAAAATAATAGGTGTTGACATCAACCCTGATAAATTCATCAAAGCCCAAGGCATGGGAGTCACTGACTTCATAAACCCAAAGGATGGAGAGAAGCCTGTATACGAGAGAGTAAGAGAAATAACTGATGGAGGTGTAGACTACAGTTTTGAATGCACTGGAAACCTGGAGGTTCTAAGGGATGCATTTTCTTCTGCTCATGCGGGTTGGGGATTGACTGTAATATTGGGAATTCATACATCACCAAGGTTGCTTCCCATTCACCCGATGGAGCTCTTCGATGGTCGCAGCATCACAGGATCAGTATTTGGAGGTTTCAAAGGGAAAAGTCAGTTGCCTCATTTTGCCACACAATGTGGAAATGGAGTGGTGAAGCTGGATCATTTCATTACCCACGAGCTACCCATTGAGGAGATAGACAAAGCGTTCGACCTTTTGATCGCAGGGAAATCACTGAGATTCTGGTTAAGGTCTGAGGGTGCTTTTGAACAGTGTGCTAGAGCCAAGAAAGAGAATAAATGGAAGTGTACTCGGCTTTGTTTCCCACCCAGTCTGAAACCACCATACATATGCACAAATGTAAAAGGTGAACTGGGAACAGTTCATGAGTAG 1320 0.4886 MANENGSLNSNPTMDTRGKTITCKAAVAYGPGEPFVVEEILVHPPQKLEVRIKILYTSICHTDLSAWRGENESQRAYPRIFGHEASGIVESVGEGVSEVEEGDVVVPIFHGECGECCYCKCEKSNMCERHGVNPMKKVMEDGTSRFSTVDGKPIFHFLNTSTFSEYTVVDSACVVNFHRSDHTLALKNLTLLSCGVSTGVGAAWNTANVQSASTVAIFGLGAVGLAVAEGARARGASKIIGVDINPDKFIKAQGMGVTDFINPKDGEKPVYERVREITDGGVDYSFECTGNLEVLRDAFSSAHAGWGLTVILGIHTSPRLLPIHPMELFDGRSITGSVFGGFKGKSQLPHFATQCGNGVVKLDHFITHELPIEEIDKAFDLLIAGKSLRFWLRSEGAFEQCARAKKENKWKCTRLCFPPSLKPPYICTNVKGELGTVHE 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00727 439 SUPERFAMILY GroES-like 16 218 IPR011032 -
Spst1g00727 439 Pfam Zinc-binding dehydrogenase 222 341 IPR013149 -
Spst1g00727 439 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 82 96 IPR002328 GO:0008270|GO:0016491
Spst1g00727 439 FunFam S-(hydroxymethyl)glutathione dehydrogenase 199 337 - -
Spst1g00727 439 Gene3D - 199 337 - -
Spst1g00727 439 FunFam Alcohol dehydrogenase 6 26 214 - -
Spst1g00727 439 Pfam Alcohol dehydrogenase GroES-like domain 49 144 IPR013154 -
Spst1g00727 439 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 188 354 IPR036291 -
Spst1g00727 439 SUPERFAMILY GroES-like 344 391 IPR011032 -
Spst1g00727 439 PANTHER ALCOHOL DEHYDROGENASE 18 390 - -
Spst1g00727 439 Gene3D - 26 389 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00727 Spst-Chr1 9375716 9381742 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00727 49 383 Monolignol Biosynthesis Gene Families AT2G21890 26.685 3.20e-12 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00727 K00001 - gmx:100819896 613.224