Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00725 ATGGGGTTTGGTCTGAAAAGGAGGAAGAAGAGAGGAGAAGCAGAAGAAGAAGGAAGGATGCGCAAGTCTTTCAAGGATTCAGTCAAAGCTCTTGAAGCTGACATCCACTTTGCCAACACACTAGCTTCTGAGTACCCAAGTGGCGGTGCCTGCTTCCAAATGAGATTGTCCTATAGCCCAGCTGCTCAGTTCTTCCTTTTTTTGGTTCAATGGACTGATTGTCACATTGCTGGAGTCTTAGGATTGCTCAGAATTCTAATATACAAGGCATATGAAGATGGGAAGACAACCATATCCAACTATGAAAGAAAAGCCAGTCTTAAGGAGTTCTATGGGGTGGTGTTTCCCTCTTTATTACAACTCCACAGAGGAATCACTGATGTTGAAGACAGAAAACAAAAACATCTATGTTCTACTAAGTATAAGCTTAAAGATTTGACAAGCAAAGGAAAGATTTCTGAAATTGACATGGAGAGAGAAGTAGAGTGTGGTATTTGCTTGGAGGTGAATAGCATGGTTGTATTGCCCAACTGCAATCATTCAATGTGTATGAAATGCTACCAAGACTGGCACGCAAGATCTCAATCTTGTCCTTTCTGCCGAGACAATCTCAAAAGAGTAAACTCAGATGATCTTTGGATCTACATCGGCAGCAATGAGATTAATGACTTGGCTTCAATCAACAAGGAGAATTTGAAAAGATTATTTATGTACATAGAAAGTTTGCCTCTAATTGCCAGACCCTATATTCATCATGTCATATCCTCACCACTAGTGATTGCCAATTAG 789 0.4043 MGFGLKRRKKRGEAEEEGRMRKSFKDSVKALEADIHFANTLASEYPSGGACFQMRLSYSPAAQFFLFLVQWTDCHIAGVLGLLRILIYKAYEDGKTTISNYERKASLKEFYGVVFPSLLQLHRGITDVEDRKQKHLCSTKYKLKDLTSKGKISEIDMEREVECGICLEVNSMVVLPNCNHSMCMKCYQDWHARSQSCPFCRDNLKRVNSDDLWIYIGSNEINDLASINKENLKRLFMYIESLPLIARPYIHHVISSPLVIAN 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00725 262 ProSitePatterns Zinc finger RING-type signature. 178 187 IPR017907 -
Spst1g00725 262 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 147 211 IPR013083 -
Spst1g00725 262 PANTHER RING FINGER PROTEIN 41, 151 22 245 - -
Spst1g00725 262 SUPERFAMILY RING/U-box 152 206 - -
Spst1g00725 262 Pfam Zinc finger, C3HC4 type (RING finger) 160 206 - -
Spst1g00725 262 ProSiteProfiles Zinc finger RING-type profile. 163 201 IPR001841 -
Spst1g00725 262 FunFam RING/U-box superfamily protein 144 210 - -
Spst1g00725 262 SMART ring_2 163 200 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00725 Spst-Chr1 9351126 9353895 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00725 157 240 C3H Transcription Factor Family AT2G20030 31.522 2.04e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00725 K25840 - gmx:100814293 467.233