Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00724 ATGGGGCTCAGCAGTTTTCTATGGAACTGTACTAAAAAATTCGCCACAGCTGCTGTCATCACTGTGACTGTGTCTGATCGTTTTGCGAGTGTTGTTCCTGTTCGAGGTGGCTCTATGTCTCCCACATTAAATCCTAAATCCGGTTCTCAAATGGGAGATTTTTTTGATGACTATGTCTTGGTTGAGAAATTTTGCCTCGGGACGTACAAATTTTCAAATGGCGATGTGGTGGTCTTCCGCTCACCAATGAATCACAAGGAGACACTCATAAAGAGAATAGTTGCATTACCTGGTGAATGGTGTGGCGATCATTATAACCATGATGTGATTCAGATTCCACCAGGACACTGTTGGGTCGAGGGAGACAACGCAGATTCTAGCATGGATTCAAGGTTATTTGGACCAATTCCTTTGGGCCTAATTCGGGGAAGTGTTACCCACGTTGTGTGGCCTCCTCATAGAATAGGAGCTGTCGAGAAGAAAACTCCACCGCAAGGATTATCTTCTGTGTTGGAATAA 519 0.4451 MGLSSFLWNCTKKFATAAVITVTVSDRFASVVPVRGGSMSPTLNPKSGSQMGDFFDDYVLVEKFCLGTYKFSNGDVVVFRSPMNHKETLIKRIVALPGEWCGDHYNHDVIQIPPGHCWVEGDNADSSMDSRLFGPIPLGLIRGSVTHVVWPPHRIGAVEKKTPPQGLSSVLE 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00724 172 PANTHER MITOCHONDRIAL INNER MEMBRANE PROTEASE SUBUNIT 2 1 165 IPR037730 GO:0006465|GO:0006627|GO:0008236|GO:0042720
Spst1g00724 172 FunFam Mitochondrial inner membrane protease subunit 25 163 - -
Spst1g00724 172 Gene3D Umud Fragment, subunit A 24 162 - -
Spst1g00724 172 SUPERFAMILY LexA/Signal peptidase 29 158 IPR036286 -
Spst1g00724 172 CDD S26_SPase_I 30 143 IPR019533 GO:0004252|GO:0006465
Spst1g00724 172 Pfam Signal peptidase, peptidase S26 109 150 IPR019533 GO:0004252|GO:0006465
Spst1g00724 172 Pfam Signal peptidase, peptidase S26 9 99 IPR019533 GO:0004252|GO:0006465
Spst1g00724 172 NCBIfam signal peptidase I 16 99 IPR000223 GO:0006508|GO:0008236|GO:0016020
Spst1g00724 172 PRINTS Bacterial leader peptidase 1 (S26A) family signature 112 131 IPR000223 GO:0006508|GO:0008236|GO:0016020
Spst1g00724 172 PRINTS Bacterial leader peptidase 1 (S26A) family signature 89 101 IPR000223 GO:0006508|GO:0008236|GO:0016020
Spst1g00724 172 PRINTS Bacterial leader peptidase 1 (S26A) family signature 27 43 IPR000223 GO:0006508|GO:0008236|GO:0016020
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00724 39 151 MADS-box Gene Family AT1G29960 38.655 3.18e-18 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00724 K09648 - gmx:100527429 280.796