Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00720 ATGGTTCCCAGTGTATTCAAGCTTCCAACTTGCTTCGTTGTTTTCCAAGAGACTGGAGCTGGGGCCATAGCTATGTTTTCTAATTGGTTTGGTGCTTTGAATTGGTGTGGAAGAAGTGATGATCCTGCGGACCAGCCGCATGAACAAGTGGTTGCAACTAAAAAATTTAGCTATAACTCATTGAGATCAGCAACGGAAGATTTTCATCCTTCTAGTAAAATTGGTGGAGGAGGTTATGGAGTTGTCTACAAGGGAGTTTTAAGGGATGGTACTCAGGTTGCTATCAAGTCTCTTTCTGTTGAGTCTAAACAAGGAACTCGTGAATTTATGACAGAAATTGATATAATAGCAAACATACGACATCCAAATCTTGTGGGACTGATTGGCTGCTGTATTGAGGGTAGTCATCGAATACTGGTTTATGAATTTATGGAGAACAATAGCCTTGCCAGCTCTTTGCTTGGTTCAAAAAGTAAATATGTTGCTCTGGATTGGCCAAAGAGGGCTGCTATTTGTTGTGGCACAGCTTCTGGTCTATGTTTCCTTCACGAAGAGGCTCAACCAAGCATTGTTCACAGGGATATCAAGGCCAGCAACATATTGTTGGACGGTAACTTTAATCCGAAAATTGGGGATTTTGGTCTTGCAAAACTTTTTCCTGACAATGTCACCCATGTTAGTACTCGAGTTGCAGGAACTGTGGGGTATCTTGCCCCAGAATATGCACTTCTGGGACAACTTACAAAGAAGGCAGACGTTTACAGTTTTGGGATTCTCATGCTTGAAATAATCAGTGGGAAAAGTAGTAGCAGAGCTGCATTTGAAGCTGATTATTTGGTTTTGGTGGAATGGGTTGGAACTTACATCCAGTTCCCAACAAGAGGTGAGATTGTCACTACTCAGCAGCAAGCTTGGAAGCTGAAAGAAGAAAATAGGCTTCTAGACCTTGTTGATTCAGAACTAAGTGACTATGATGAGAGTGAGGTGTATCGGTTCCTTGTGGTGGCTCTATTTTGCACCCAATCAGGTGCTCAACATAGGCCAAACATGAAACAAGTATTGAAAATGCTTTCCAAGGAAGTTCATCTTAATGAGAAGGCGTTGACTGAGCCTGGAGTATACAGATGGCACAACAATGGAGAAAGGGGTCGTTCTTTGAATGAGACATCATCTCAGCCAATCAAGTACAAAACTACTGAAAATCCACATGAAGCAACGTCAACCCACTTTAGTGGTACAGATGTTGTGACTGAGATGTTTCCAAGATGA 1269 0.42 MVPSVFKLPTCFVVFQETGAGAIAMFSNWFGALNWCGRSDDPADQPHEQVVATKKFSYNSLRSATEDFHPSSKIGGGGYGVVYKGVLRDGTQVAIKSLSVESKQGTREFMTEIDIIANIRHPNLVGLIGCCIEGSHRILVYEFMENNSLASSLLGSKSKYVALDWPKRAAICCGTASGLCFLHEEAQPSIVHRDIKASNILLDGNFNPKIGDFGLAKLFPDNVTHVSTRVAGTVGYLAPEYALLGQLTKKADVYSFGILMLEIISGKSSSRAAFEADYLVLVEWVGTYIQFPTRGEIVTTQQQAWKLKEENRLLDLVDSELSDYDESEVYRFLVVALFCTQSGAQHRPNMKQVLKMLSKEVHLNEKALTEPGVYRWHNNGERGRSLNETSSQPIKYKTTENPHEATSTHFSGTDVVTEMFPR 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00720 422 Gene3D Transferase(Phosphotransferase) domain 1 144 371 - -
Spst1g00720 422 CDD STKc_IRAK 87 359 - -
Spst1g00720 422 FunFam Putative LRR receptor-like serine/threonine-protein kinase 144 369 - -
Spst1g00720 422 ProSitePatterns Protein kinases ATP-binding region signature. 74 96 IPR017441 GO:0005524
Spst1g00720 422 ProSitePatterns Serine/Threonine protein kinases active-site signature. 190 202 IPR008271 GO:0004672|GO:0006468
Spst1g00720 422 Pfam Protein kinase domain 69 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst1g00720 422 SMART serkin_6 68 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst1g00720 422 ProSiteProfiles Protein kinase domain profile. 68 363 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst1g00720 422 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 52 381 - -
Spst1g00720 422 FunFam cold-responsive protein kinase 1 39 143 - -
Spst1g00720 422 Gene3D Phosphorylase Kinase; domain 1 38 143 - -
Spst1g00720 422 SUPERFAMILY Protein kinase-like (PK-like) 47 357 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00720 Spst-Chr1 9301245 9308578 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00720 3 372 Receptor kinase-like Gene Family AT1G56120 45.455 1.02e-101 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Spst1g00720 Pkinase 4.7e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00720 - - gmx:100785766 660.988