Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00702 ATGTCTTCCCACCATGGTTTGCCTCCTCTCCTCTTTCCATTGCACGAGTGGATTGCAGATATCCATTCACTGGATAGTGGTTATTCACCAAACACAAGCCTAAGCTTACAACAAAGCCAAAGTGTAGTTAAACTTGCATTGAAAATGGAGGAGGGAGATGAGGATGTGAGAGTAGGAGCAGACAGGTATGCAGAGAGGCAACCAATAGGAACAGGTGCACAGACACAAGATGGGAAAGACTACATAGAGGCACCCCCAGCTCCATTGTTAGAGCATAGAGAGTTAACATCATGGTCTTTCTACAGAGCAGGGATAGCAGAATTTGTGGCCACATTCTTGTTTCTTTATGTCACTGTTTTGACTGTGATGGGTGTGGCAAAATCTCCCAACAAGTGCTCCACAGTTGGCGTCCAGGGCATTGCTTGGTCATTTGGGGGAATGATCTTTGCCCTTGTCTATTGCACTGCTGGTATCTCAGGGGGTCACATTAACCCAGCTGTGACATTTGGGTTGTTCTTGGCACGCAAGTTATCTCTCACTAGGACAGTGTTCTACATGATCATGCAGTGCTTGGGAGCTATATGTGGTGCTGCTGTGGTCAAGGGATTCCAATCAAACCAATATGAGAGGCTTGGTGGTGGTGCCAACATTCTCAGTAAAGGATACTCCAAAGGGGATGGCCTTGGAGCAGAAATTGTTGGCACATTCATTCTAGTTTACACTGTTTTCTCTGCCACAGATGCCAAGCGAAATGCTAGAGACTCGCATGTTCCTATTTTGGCACCTTTGCCGATCGGTTGTGCTGTGTTTCTGGTGCACATGGCTACCATTCCTATCACAGGAACTGGGATCAACCCTGCTAGAAGTTTAGGTACAGCACTTGTATACAACGAGGACCAAGCTTGGGATAACCACTGGATCTTCTGGGTTGGTCCTTTTATTGGGGCAGCACTTGCAGCTTTATACCATCAGATAGTGCTCAGGGCCATTCCTTTTACATCAAAGTGA 1008 0.4663 MSSHHGLPPLLFPLHEWIADIHSLDSGYSPNTSLSLQQSQSVVKLALKMEEGDEDVRVGADRYAERQPIGTGAQTQDGKDYIEAPPAPLLEHRELTSWSFYRAGIAEFVATFLFLYVTVLTVMGVAKSPNKCSTVGVQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRTVFYMIMQCLGAICGAAVVKGFQSNQYERLGGGANILSKGYSKGDGLGAEIVGTFILVYTVFSATDAKRNARDSHVPILAPLPIGCAVFLVHMATIPITGTGINPARSLGTALVYNEDQAWDNHWIFWVGPFIGAALAALYHQIVLRAIPFTSK 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00702 335 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 62 331 IPR034294 -
Spst1g00702 335 ProSitePatterns MIP family signature. 162 170 IPR022357 -
Spst1g00702 335 SUPERFAMILY Aquaporin-like 92 327 IPR023271 -
Spst1g00702 335 Pfam Major intrinsic protein 94 323 IPR000425 GO:0015267|GO:0016020|GO:0055085
Spst1g00702 335 FunFam Probable aquaporin PIP1-2 87 335 - -
Spst1g00702 335 PRINTS Major intrinsic protein family signature 181 200 IPR000425 GO:0015267|GO:0016020|GO:0055085
Spst1g00702 335 PRINTS Major intrinsic protein family signature 102 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
Spst1g00702 335 PRINTS Major intrinsic protein family signature 144 168 IPR000425 GO:0015267|GO:0016020|GO:0055085
Spst1g00702 335 PRINTS Major intrinsic protein family signature 266 288 IPR000425 GO:0015267|GO:0016020|GO:0055085
Spst1g00702 335 PRINTS Major intrinsic protein family signature 306 326 IPR000425 GO:0015267|GO:0016020|GO:0055085
Spst1g00702 335 PRINTS Major intrinsic protein family signature 230 248 IPR000425 GO:0015267|GO:0016020|GO:0055085
Spst1g00702 335 Gene3D Glycerol uptake facilitator protein. 87 332 IPR023271 -
Spst1g00702 335 CDD MIP 102 326 IPR000425 GO:0015267|GO:0016020|GO:0055085
Spst1g00702 335 NCBIfam MIP family channel protein 106 323 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00702 Spst-Chr1 9188151 9193111 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00702 49 335 Major Intrinsic Protein MIP AT4G23400 80.139 7.84e-168 467
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00702 K09872 - gmx:100809467 546.199
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g00702 1 9188151 9193111 Spst4g01298 4 49619883 49622032 PCT