Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00701 ATGCAGCTAAACAATTTCTCTGGCAGCATTCCTGTCGAAATTGGGAAGTTGGTCAAGCTGGAAACGTTATGGCTTTCAAACAATAATCTTTCCGGTTCAATTCCTCAAGAAATTGGAATGATGACAAATTTGCTTCAACTGGATTTGTCCAATGACTCTTTGTCAGGTACAATCCCTCCTACAATTGGAAATCTGAGCAAGTTAACCCAGTTTTACAGGTATGACAACCATCTATATGGATCAATCCCTAATGAATTGGGAAGACTCCGATTTCTTCTGACGATCCAATTGTTGGACAATAATCTCTCTGGACCAATTCCATCTTCCATAGGTAACTTGGTCAATTTGGACTCTATTCGCCTTAATGGAAACAAACTCTCTGGAACAATTCCTTCGACTATTGGAAGCATTCCACCAGAACTAAGTCAGGCAACCAATTTACATGTATTTCCACTGTCTTCAAATCACCTCACAGGAGTCATTCCAAAAGATTTAGGTAATTTGACCTACTTGTTCAAACTCTCTCTCAATAATAACAATCTTTCTGGGAATGTTCCTATACAAATAGCATCATTGCAAGATCTTGACACCTTAGAGCTTGGAGCAAATAGTGATCTCTCCTGCCTTGATCAGATGGTAAGCTTGACATCTATTGATATATCATACAATCAGTTAGAGGGTTCACTTACAAACATTCCAGCCTTCAATATTGCTACAATTGAAGCATTGAGAAATAATAAAGGCTTGTGTTGCAATCTCTCTGGCTTGGAACCATGCATAACCTCACAAGACAGATATCAAAATCATAAGACTACGAAAGTCATATTGGTATTTTTGCCTATTGGTTTTGGGTACTTCAATGCTAGGATTATCTACTCAAGAATTGAAGCCACAGAAGAGTTTGACAATAAACATCTAATTGGAGTTGGAGGACAAGGAAGTGTTTACAAAGCAAAATTGAAAACAAATCAAATTGTTGTTGTGAAGAAACTCCACCCAGGACAAAGTGGACAAATATTTAAGGTTAAAGCTTTCTTCTTGGAAAAGGGAAGCATAGATAAGATTTTGAAAGATGATGAACAGACAGTTGCATTTTATTGGAATTGGAGGATTTATGCCATTAAAGATGTAGCAAATGCTTTATGCTATATGCATCATGATTGTTCACCCCCAATTGTTCATCGAGATATATCAAGCAAAAATGTTCTTTTGGATTTGGAGTATGTGGCTCGCACTTTTGGATATGCTGCTCCAGAACTGGCATTCACAATGGAAGTAAATGAAAAATGCGATGTATATAGTTTTGGGGTATTAGCTCTGGAAATACCTTTTGGAGAGCACCCTCCAGATTTTATAACCTCATTGATGGCATCTTCATCGACTGTGATAGACAAATCAAAACTTGATATTCCTTCATTGATGGGTAAGTTAGACCAACGTCTCCCTTATCCTGCAAATTCTGTTGTTAAGGATATAGTTTTGGTAGTAAGAATAGAAAATACTTGCTTAACTGAAATTCCTCGATGGCGCCCTACCATGGAACAAGTTACCAAGGAGCTTGCAATGTTGTTGAAGACATCTTCAATCTATTAA 1593 0.3735 MQLNNFSGSIPVEIGKLVKLETLWLSNNNLSGSIPQEIGMMTNLLQLDLSNDSLSGTIPPTIGNLSKLTQFYRYDNHLYGSIPNELGRLRFLLTIQLLDNNLSGPIPSSIGNLVNLDSIRLNGNKLSGTIPSTIGSIPPELSQATNLHVFPLSSNHLTGVIPKDLGNLTYLFKLSLNNNNLSGNVPIQIASLQDLDTLELGANSDLSCLDQMVSLTSIDISYNQLEGSLTNIPAFNIATIEALRNNKGLCCNLSGLEPCITSQDRYQNHKTTKVILVFLPIGFGYFNARIIYSRIEATEEFDNKHLIGVGGQGSVYKAKLKTNQIVVVKKLHPGQSGQIFKVKAFFLEKGSIDKILKDDEQTVAFYWNWRIYAIKDVANALCYMHHDCSPPIVHRDISSKNVLLDLEYVARTFGYAAPELAFTMEVNEKCDVYSFGVLALEIPFGEHPPDFITSLMASSSTVIDKSKLDIPSLMGKLDQRLPYPANSVVKDIVLVVRIENTCLTEIPRWRPTMEQVTKELAMLLKTSSIY 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00701 530 ProSiteProfiles Protein kinase domain profile. 192 523 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst1g00701 530 SUPERFAMILY L domain-like 3 235 - -
Spst1g00701 530 PANTHER LEUCINE RICH REPEAT KINASE 2 208 523 - -
Spst1g00701 530 Gene3D Phosphorylase Kinase; domain 1 282 351 - -
Spst1g00701 530 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 1 82 - -
Spst1g00701 530 Gene3D Ribonuclease Inhibitor 1 261 IPR032675 -
Spst1g00701 530 SUPERFAMILY Protein kinase-like (PK-like) 288 520 IPR011009 -
Spst1g00701 530 ProSitePatterns Tyrosine protein kinases specific active-site signature. 392 404 IPR008266 GO:0004672|GO:0006468
Spst1g00701 530 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 133 207 - -
Spst1g00701 530 ProSiteProfiles Leucine-rich repeat profile. 19 41 IPR001611 GO:0005515
Spst1g00701 530 Gene3D Transferase(Phosphotransferase) domain 1 409 523 - -
Spst1g00701 530 Gene3D Transferase(Phosphotransferase) domain 1 352 408 - -
Spst1g00701 530 Pfam Leucine Rich repeats (2 copies) 19 55 IPR025875 -
Spst1g00701 530 Pfam Protein tyrosine and serine/threonine kinase 414 520 IPR001245 GO:0004672|GO:0006468
Spst1g00701 530 Pfam Protein tyrosine and serine/threonine kinase 346 407 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00701 Spst-Chr1 9183223 9185737 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00701 4 439 Receptor kinase-like Gene Family AT4G08850 31.660 3.92e-62 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Spst1g00701 PK_Tyr_Ser-Thr 2.6e-06 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00701 - - gmx:100811066 517.694