Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00697 ATGAATAGGGCAATTGAAGTACTGTCTCCAGCCTCCTATCTCCAAAATTCCAACTGGTTGTTCCAGGAAAGCAAGGGAGCAGGATGGACTGCTGAAGAGAACAAGCTGTTTGAGAATGCTTTGGCTTACTATGATAAGGACACCCCAGATAGATGGATGAGGGTGGCAGCCATGATTCCAGGGAAAACTGTTGGTGATGTGATTCAACAGTACAGAGAACTTGAGGAAGATGTGAGTGTCATTGAAGCAGGTTTGATCCCAGTTCCTGGATATACTACGAGTTCTTTCACATTGGACTGGGTTAACAGCCAAAGCTATGATGAGTTCAAGCAGTTTTGTAGTGTTGGTGGGAAAAGAGGTGCATCCACTAGGCCATCTGAGCAGGAAAGGAAGAAAGGAGTGCCATGGACTGAAGAAGAGCACAGGCAATTTCTGCTGGGTCTCAAGAAATATGGTAAAGGGGATTGGAGAAACATATCAAGGAACTTTGTGACCACAAGGACACCCACTCAGGTTGCAAGTCATGCTCAGAAGTACTTCATCAGGCAGCTTAGTGGAGGGAAGGACAAGAGGAGATCCAGTATCCATGACATCACAATGGTCAATCTTCAAGAAACAAAATCTCCTTCATCAGACACTACCAGGCCTTCTTCACCACTAAAGAATCAGAAATTGTCTAGCATGGTACCGGTTAAGCAGGAATATGACTGGAAATTGCCATGTGAGGGCATGCCTATTGTTTTCAATTCAGCAAATGGAAACATGTTCATGGCAGCACCACTGCATGGGATTTCTTCATATGAGTCTAGACCACAGGAGCATAATATACTTAGACAATCTCCATGGATGCCAGTTTTCACCTGGTGA 867 0.4464 MNRAIEVLSPASYLQNSNWLFQESKGAGWTAEENKLFENALAYYDKDTPDRWMRVAAMIPGKTVGDVIQQYRELEEDVSVIEAGLIPVPGYTTSSFTLDWVNSQSYDEFKQFCSVGGKRGASTRPSEQERKKGVPWTEEEHRQFLLGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKYFIRQLSGGKDKRRSSIHDITMVNLQETKSPSSDTTRPSSPLKNQKLSSMVPVKQEYDWKLPCEGMPIVFNSANGNMFMAAPLHGISSYESRPQEHNILRQSPWMPVFTW 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00697 288 MobiDBLite consensus disorder prediction 203 225 - -
Spst1g00697 288 ProSiteProfiles SANT domain profile. 136 184 IPR017884 -
Spst1g00697 288 MobiDBLite consensus disorder prediction 117 136 - -
Spst1g00697 288 Pfam Myb-like DNA-binding domain 135 180 IPR001005 -
Spst1g00697 288 Gene3D - 134 184 - -
Spst1g00697 288 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 128 184 IPR017930 -
Spst1g00697 288 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 23 247 IPR043363 -
Spst1g00697 288 SMART sant 132 182 IPR001005 -
Spst1g00697 288 SMART sant 25 77 IPR001005 -
Spst1g00697 288 CDD SANT 135 180 IPR001005 -
Spst1g00697 288 FunFam transcription factor MYB1R1 134 185 - -
Spst1g00697 288 ProSiteProfiles Myb-like domain profile. 128 180 IPR001005 -
Spst1g00697 288 SUPERFAMILY Homeodomain-like 129 183 IPR009057 -
Spst1g00697 288 SUPERFAMILY Homeodomain-like 28 82 IPR009057 -
Spst1g00697 288 FunFam Transcription factor SRM1 21 88 - -
Spst1g00697 288 NCBIfam myb-like DNA-binding domain, SHAQKYF class 131 183 IPR006447 GO:0003677
Spst1g00697 288 Gene3D - 21 88 - -
Spst1g00697 288 CDD SANT 29 74 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00697 Spst-Chr1 9130809 9132259 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Spst1g00697 Myb_DNA-binding 3.7e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00697 - - gmx:100775697 535.798
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g00697 1 9130809 9132259 Spst1g00697 1 9130809 9132259 ECH
Spst1g00697 1 9130809 9132259 Spst8g00449 8 4240225 4241863 ECH
Spst8g00449 8 4240225 4241863 Spst1g00697 1 9130809 9132259 ECH