Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00677 ATGGTTGAAGTCATGAAGAGGAAAATGAAGATTGTGAGACTCTCTTTCCTCCTTTTCTTTCTACTGCAAGTCATTTCCTCTCAATCATGTTCCCAGCAAGACAGACTTGCTCTGTCGGTCCTATCTTCAAGTTTCCAAATCCCTTTCTCTTCGAACTCAGATTGTTGTGAATGGGAAGGAGTGAAGTGCAACTCCTCCACAGGGAGAGTGGCCAAACTCAAGTTGTGGAGGAAATCATCACATGAACAGTATATTAATTACTCGGATTTTTCTGTCTTCAAAGATTTGAAGAACCTCCACTTGTCATTTGATAATAATATAGTTGGTTGTGTGGGGGATGAAGGGTTGCCAAATCTGGAGGTCCTTGAATTGAAGCTGGATAATGCTGCCAGCATTCTGTCTTGTGTGGATGGCCTTTCAAATCTCAAGTCTCTATATTTATCGTATAACAGCTTCAATACATCTTCCTTGCACCACGTTTTGGAAACTCTCTCATCAAAGCTGAGCAATCTGGAGGTCCTTGACATAAGTGGGAACACTTTGACTAATGACATCTTGCCATCCCTCGAGGGATTCACATCTTTAAAGGAGCTGCATTTGTCTCAGACTGAATTGGACTCAGATCTTCACATTGAAGAGAACGACGGATTTAAATGGCCAACCAATTTACAAGTCTTAAGCTTGAGGGAATGCAGTTTGGGCAACAAATTTATTTCATCTCTAAGTGGGCTTGGAAGTCTCAAGTCCCTTGATTTAAGTGGAAATCAGTTAGAAGGATCGGTAGATATCAGTGGCTCAAAAAGTTTAAGTAGATTGGAAGAACTTACTTTAGATGGGAATATGATAGATGGAAACAAGCTCAGGGACTCATTACGAGCTTTATCATCATCTATTCGGGTCCTTTCTATGTCTCGCAATACATTTAATGGAACAATTGTTGCGAGAGATTTTAAGGATTTAAGTAACCTACAAAATTTGATATTGGACAAAACTAGTTACATGGAAAACAAGTTTTTCAACAGTATTGGGGAATTGACATCTTTAAAACTTCTTTCTGTTACATATTCTGACATGAATGCCACTCTTCCTCATGCCGATTGGTTTAAACTGAAGAATCTCGAAGAGTTAGATCTAAGCTATAATAGATTTGATGGACCGCTTCCCTCATCTTTTGGTAACATGACATCTCTTCGGAAGTTGGAACTTTATGAAAATCACTTCATTGGTCAGTTTGATTCAAAAATTGCTAGCCTTACATCACTTGAACATTTTGGTTTCACAGGAAATCAATTTGAGGTCCCTATTTCTTTTGCACCATTTGCCAATCACTCAAACCTAAAGTTCATATATGGTGAAGGCAACAAAGTCATATTGGACTTACAACCTAGTCTGCAAACTTGGATTCCTAAATTTCAATTACAAGTACTGAGCTTGCCTTCAATGACTGAGACTAATTCTCTTCCTCTCCCCAGGTTTCTTCTTCATCAAAACAGCTTGACTAGCTTAGATTTAAGTAGTTGTAGGTTGGAAGGAGAGTTTCCTCAATCGTTGTTTCAAAACAACACAAAGTTGACGGAGCTTGTCGTTAGAAATTGCTCTTTCACAAGTGTTTTCCAGCTACCATTGCATCCCCTTCCTCACATGAGGAGAATTGATGTGTCTGACAATAACATTATTGGCCAAATCCCCAGTAACAATATCAGTTCAATTTTACCAAATTTGCAATTTCTAAACTTGTCTGGAAACCACATCCAAGGTTCAATCTCTCCTGAGTTTGGGCAAATGAACTTATTGGATACATTGGATCTCTCGGAAAATCGTTTATATGGAGAAATTCCAAAGAACATATCCGGGGACAGGTCTCTGCTCAAATACTTGAAACTTTCACACAATAAGCTAGATGGGCAGATATTTCCAACTTTGAAATCCTTGGAGCAGCTGTATTTAGATGACAATAGCCTTTATGGTAGCATACCAAGTAGCTTTTTAAACTCATCTCTCATAAGCTTGGATATAAGCAATAATAATGTAGAGGGGAAGCTACCAAGTGTGGTAGGAAATTTGTCAAACTTGCAAACCCTTTCATTGTCCAACAATCATCTTGAAGGATCTATTCCGACAAGCCTTGCGGAACTTGTAAATCTAGCGTATATAGATTTATCACACAATAATTTGACAGGTTCTGTACCATCTTTTGTCAATTCTTCATTGAATTACATCCATTTGAACAACAACAGGTTAAGTGGTTTATCCAAAAGAATGTTCAGCAAAAGCTCTTTCTTAGTGGTGCTCGACCTTAGTTACAATGAAATAACCAACAGCATTCAAGATATGATACAAGACCTTTCTGATACAAGGTTGAACGTACTCATTTTGAAAGGTAGCCGCTTTACAGGGCATCTACCAAGGCAGTTATGCCAATTGGTAGGTTTAAGTATACTAGACCTTTCTTATAACAATTTTGTTGGTTCAATACCCAATTGCTTGGGTAAAATGTCTTTTGAGAGTACTCACCCTGAGTTGTTAAGGGCTGCATTTAATGGCTTTATTAGTGAAGACAATAGCGGTACAGGATTTTTTGTACCAAATATACACGAGAAAGCAAACTTCACTACGAAGAAAATATCCTACATATATTCAGGGAAGATCCTTGCTTATATGTCTGGAATTGATTTATCCACAAATAAACTAAATGGGAGTATTCCATTTGAGCTTGGAAACTTGACAAGAATTCGTGCATTGAACTTGTCTCACAATGATTTGATTGGACAAATTCCAGCTACATTCTCCAAATTATCAGAAATAGAGAGTTTAGATCTTTCTTTTAACATGTTGAGTGGCCAAATTCCTCCTCAGCTAAACGAGTTGAACTCTCTTGCTGTATTTAGCGTTGCACACAACAACTTATCTGGTGAAACACCCGAACGAAAAGGCCAGTTTATTACCTTCGATGAAAGCAGCTATGAAGGCAATTCTCTTCTTTGTGGACCTCCATTGCTAAAAAGTTGTTATCCTCAAGCACAATCACCTACCATTTTTCCAAACGAAGACAATGACAGTTCAGTGGACATGAATGTGTTTTGTGCGAGCATGGTTTCACTTCGAATTCGTTGGCTTGCTGAGGTGCGTTGCGGTGGCTACTCTTCCATTCTCTTGCTCAATTTTGCGAGTTCATGTGCTTCAGTTCAGAATGTTGAGCTGAATTTTGCCAACTTCGGGTTGAAACTGTGTTGCACCTTGGAGTTAGGAGGCTATAAGTGTGCTAGAGGGCACATGCAATTTCCAGGATCACACCCAGTTTCCTTAAACAGAGAAAATTTACAACTATTACGACAGCATTATTATTATGCAACATGGAAAGCTGATGGAACAAGATATATGATGCTAATAACTATGGATGGATGTTACTTGATTGATAGAAGTTTCAATTTTCGAAGGGTCCAAATGAGGTTTCCCTGCAGGATTACAATTGATGGCGTGGCTGAGAAGACGCACCACTTCACTTTACTTGATGGGGAGATGATTATTGATACATTGCCAGATTCAAAAAAGCAGGAAAGGAGATACCTCATATATGATCTGATGGCAGTCAATGGAGTATCAGTTATAGAGGTGCAGCGACCATTTTATGAACGATGGAAGATGCTTGAGAAAGAAGTGATTGAACCTAGGAATCAGGAACGGTTCCAGGGCAGAAATCCCTACTATAGATATGACATTGAGTCATTCCGGGTGAGGAGAAAAGATTTTTGGTTGCTCTCTACTGTCACAAAACTTTTAAACGAATTCATTCCAAGACTTTCGCATGATGCAGATGGTCTCATATTTCAGGGTTGGGATGATCCTTACATACCTAGCACTCATGAAGGCCTCCTAAAGTGGAAATATGCTGATCTGAATTTGGTTGATTTTCTTTTTGAGGTGTTTGGTTTGGTTTGGTCACTTCTAGCTGTTGCACATGCCCCCCAACTAATTCCCAGCTGTGTTGACAGATTGAGAATGACTGAATGGATTTACAAGCGAATCAGAACAGATAAATCAACTCCGAATGACTTTAATACATGTGATGCGAAGTATAAGAGACAATATCATATAGAGGATATCCTATTAAATGAAATAAATGAGATAATTCGCCTTCCCATGTATGCCGACAGGATAAGAACTGATAGCAAAGCCAATCAACACACAAACTTGGCACGGAGAAGGTTGAGGCTGAAAAAACTCACTGGAAAGAATCGCATTTGGGCATCCATTGATAATTATGAGGTGGGTGGAGGATATCCAGAACTGAAGAAGGACGAAAAGAGGAGAAACAGAAAGTCGCATTCAGACACGTCTCACACGGACTCTTTTCTCAGGGGAGGGGACCAAGTCATCTCTGTCTTGGAAGAAATGGTTACCCTTTTGGATGACATGAATATGGATGAGGAATCTGAGAAAGTGGCAGTGGAGTTAGCTGCACAAGGAGTTATAGGAAAGAGAGTTGATGAGATGGAGTCTGATTTCATGACGGCTCTTGACTATATGATTCAACTTGCCGAAAAGGACAAGGATGATAAGCGCAAAGAACTGTTGGAAGTGATCAAAGAGACTATATTATCACATCTAACAAAAAAATGTCCACCCCATGTTCAAGTAGTTGGTCTTCTATGTAGAACTCCAAAAAAAGATAGTCGGCATGAGTTGATGCGCCGAGTTGCAGCTGGTGGTGGTGCATTTAAAGGCGAGAATGACTTGAAGATTCATATCCCAGGGGCAAATCTAAATGACATAGCTAATCAAGCTGATGATTTGTTGGAGGCAATGGAAACTCGTTCTGTTATCCCAGACCGAAAACTACTTGCAAGGCTTGTTTTGATTAGAGAAGAAGCTCGCGATATGATGGGAGGGGGAATTATGGATGAAAGAAACCACCGTGGATTCTATACACTTCCCCAGCCTGAGGTGGACTTCTTGACCAAATTGGTGGCTCTAAAACCTGGGAAAAAGGTGCTTGATATGATAAAAAATGTAATGCAAGGAAAAGATGAAGGTGCAGACAAGGCCGACGAGGATGAATCTACAGATCAGGATCCAATTGAATTTCTTGGAAGGCCACTTGTAACAGGAGAAAAGACACTTCCAGTACGCCCTGGCATGTTTCTTGAGACTGTCTCCAAGGTCTTATCTGGTTTATATGCTGGAACTGATTCTGGCATCACTGCACAACATCTGGAATGGGTTCATAAGAAGACACTTGAAGTGCTTCAGGAGGTAGCATTTGACTAA 5268 0.3967 MVEVMKRKMKIVRLSFLLFFLLQVISSQSCSQQDRLALSVLSSSFQIPFSSNSDCCEWEGVKCNSSTGRVAKLKLWRKSSHEQYINYSDFSVFKDLKNLHLSFDNNIVGCVGDEGLPNLEVLELKLDNAASILSCVDGLSNLKSLYLSYNSFNTSSLHHVLETLSSKLSNLEVLDISGNTLTNDILPSLEGFTSLKELHLSQTELDSDLHIEENDGFKWPTNLQVLSLRECSLGNKFISSLSGLGSLKSLDLSGNQLEGSVDISGSKSLSRLEELTLDGNMIDGNKLRDSLRALSSSIRVLSMSRNTFNGTIVARDFKDLSNLQNLILDKTSYMENKFFNSIGELTSLKLLSVTYSDMNATLPHADWFKLKNLEELDLSYNRFDGPLPSSFGNMTSLRKLELYENHFIGQFDSKIASLTSLEHFGFTGNQFEVPISFAPFANHSNLKFIYGEGNKVILDLQPSLQTWIPKFQLQVLSLPSMTETNSLPLPRFLLHQNSLTSLDLSSCRLEGEFPQSLFQNNTKLTELVVRNCSFTSVFQLPLHPLPHMRRIDVSDNNIIGQIPSNNISSILPNLQFLNLSGNHIQGSISPEFGQMNLLDTLDLSENRLYGEIPKNISGDRSLLKYLKLSHNKLDGQIFPTLKSLEQLYLDDNSLYGSIPSSFLNSSLISLDISNNNVEGKLPSVVGNLSNLQTLSLSNNHLEGSIPTSLAELVNLAYIDLSHNNLTGSVPSFVNSSLNYIHLNNNRLSGLSKRMFSKSSFLVVLDLSYNEITNSIQDMIQDLSDTRLNVLILKGSRFTGHLPRQLCQLVGLSILDLSYNNFVGSIPNCLGKMSFESTHPELLRAAFNGFISEDNSGTGFFVPNIHEKANFTTKKISYIYSGKILAYMSGIDLSTNKLNGSIPFELGNLTRIRALNLSHNDLIGQIPATFSKLSEIESLDLSFNMLSGQIPPQLNELNSLAVFSVAHNNLSGETPERKGQFITFDESSYEGNSLLCGPPLLKSCYPQAQSPTIFPNEDNDSSVDMNVFCASMVSLRIRWLAEVRCGGYSSILLLNFASSCASVQNVELNFANFGLKLCCTLELGGYKCARGHMQFPGSHPVSLNRENLQLLRQHYYYATWKADGTRYMMLITMDGCYLIDRSFNFRRVQMRFPCRITIDGVAEKTHHFTLLDGEMIIDTLPDSKKQERRYLIYDLMAVNGVSVIEVQRPFYERWKMLEKEVIEPRNQERFQGRNPYYRYDIESFRVRRKDFWLLSTVTKLLNEFIPRLSHDADGLIFQGWDDPYIPSTHEGLLKWKYADLNLVDFLFEVFGLVWSLLAVAHAPQLIPSCVDRLRMTEWIYKRIRTDKSTPNDFNTCDAKYKRQYHIEDILLNEINEIIRLPMYADRIRTDSKANQHTNLARRRLRLKKLTGKNRIWASIDNYEVGGGYPELKKDEKRRNRKSHSDTSHTDSFLRGGDQVISVLEEMVTLLDDMNMDEESEKVAVELAAQGVIGKRVDEMESDFMTALDYMIQLAEKDKDDKRKELLEVIKETILSHLTKKCPPHVQVVGLLCRTPKKDSRHELMRRVAAGGGAFKGENDLKIHIPGANLNDIANQADDLLEAMETRSVIPDRKLLARLVLIREEARDMMGGGIMDERNHRGFYTLPQPEVDFLTKLVALKPGKKVLDMIKNVMQGKDEGADKADEDESTDQDPIEFLGRPLVTGEKTLPVRPGMFLETVSKVLSGLYAGTDSGITAQHLEWVHKKTLEVLQEVAFD 1755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00677 1755 Pfam mRNA capping enzyme, catalytic domain 1098 1295 IPR001339 GO:0004484|GO:0005524|GO:0006370
Spst1g00677 1755 Gene3D Ribonuclease Inhibitor 315 661 IPR032675 -
Spst1g00677 1755 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 30 - -
Spst1g00677 1755 SUPERFAMILY RNI-like 544 832 - -
Spst1g00677 1755 MobiDBLite consensus disorder prediction 1427 1451 - -
Spst1g00677 1755 CDD Adenylation_mRNA_capping 1089 1296 IPR001339 GO:0004484|GO:0005524|GO:0006370
Spst1g00677 1755 Gene3D Ribonuclease Inhibitor 662 734 IPR032675 -
Spst1g00677 1755 SMART LRR_typ_2 595 619 IPR003591 -
Spst1g00677 1755 SMART LRR_typ_2 571 594 IPR003591 -
Spst1g00677 1755 SMART LRR_typ_2 139 164 IPR003591 -
Spst1g00677 1755 SMART LRR_typ_2 712 734 IPR003591 -
Spst1g00677 1755 SMART LRR_typ_2 269 294 IPR003591 -
Spst1g00677 1755 SMART LRR_typ_2 688 711 IPR003591 -
Spst1g00677 1755 SMART LRR_typ_2 641 665 IPR003591 -
Spst1g00677 1755 SMART LRR_typ_2 168 194 IPR003591 -
Spst1g00677 1755 SMART LRR_typ_2 370 393 IPR003591 -
Spst1g00677 1755 SMART LRR_typ_2 932 956 IPR003591 -
Spst1g00677 1755 SMART LRR_typ_2 908 931 IPR003591 -
Spst1g00677 1755 SMART LRR_typ_2 735 757 IPR003591 -
Spst1g00677 1755 SMART LRR_typ_2 808 832 IPR003591 -
Spst1g00677 1755 SMART LRR_typ_2 244 267 IPR003591 -
Spst1g00677 1755 SMART LRR_sd22_2 168 194 - -
Spst1g00677 1755 SMART LRR_sd22_2 688 714 - -
Spst1g00677 1755 SMART LRR_sd22_2 139 159 - -
Spst1g00677 1755 SMART LRR_sd22_2 595 618 - -
Spst1g00677 1755 SMART LRR_sd22_2 244 265 - -
Spst1g00677 1755 SMART LRR_sd22_2 932 958 - -
Spst1g00677 1755 SMART LRR_sd22_2 370 396 - -
Spst1g00677 1755 FunFam mRNA capping enzyme, putative 1069 1293 - -
Spst1g00677 1755 Gene3D Ribonuclease Inhibitor 30 314 IPR032675 -
Spst1g00677 1755 ProSiteProfiles Leucine-rich repeat profile. 690 713 IPR001611 GO:0005515
Spst1g00677 1755 PANTHER RECEPTOR-LIKE PROTEIN 14 366 1040 - -
Spst1g00677 1755 SUPERFAMILY L domain-like 295 634 - -
Spst1g00677 1755 Pfam Leucine Rich Repeat 372 393 IPR001611 GO:0005515
Spst1g00677 1755 Pfam Leucine Rich Repeat 911 932 IPR001611 GO:0005515
Spst1g00677 1755 Gene3D DNA ligase/mRNA capping enzyme 1081 1295 - -
Spst1g00677 1755 Pfam Leucine rich repeat 546 608 IPR001611 GO:0005515
Spst1g00677 1755 Pfam Leucine rich repeat 666 725 IPR001611 GO:0005515
Spst1g00677 1755 MobiDBLite consensus disorder prediction 1427 1449 - -
Spst1g00677 1755 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 881 1003 - -
Spst1g00677 1755 PRINTS Leucine-rich repeat signature 688 701 - -
Spst1g00677 1755 PRINTS Leucine-rich repeat signature 247 260 - -
Spst1g00677 1755 SUPERFAMILY L domain-like 785 1000 - -
Spst1g00677 1755 SUPERFAMILY RNI-like 70 431 - -
Spst1g00677 1755 ProSiteProfiles Leucine-rich repeat profile. 573 595 IPR001611 GO:0005515
Spst1g00677 1755 Gene3D Ribonuclease Inhibitor 735 1010 IPR032675 -
Spst1g00677 1755 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 1075 1296 - -
Spst1g00677 1755 Coils Coil 1510 1530 - -
Spst1g00677 1755 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 492 749 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00677 Spst-Chr1 8931726 8950164 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00677 1079 1402 Protein tyrosine phosphatase (PTP) family AT3G09100 60.632 4.53e-128 415
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00677 - - gmx:100793099 1086.63