Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00673 ATGCTTCAGATTCGGCTTAGTAAGGCTCCTGCATCAGAGGGGTCAGGAGGGGTGAAGCTTTCGCCTGTTGAGAATGTGACAGTTGCGTGCCCTGATCATCTGGTTCTTGCTGATCTTCCTGTTGCAAAGGGCATTGGTGCAGCCACGGCTGCTTCTCTTGTGAAGACTTTGGGCCGTAGGTCCCGCCGCCAGCTTGGTGAGCGAGTCCATTTCTGTGTTCGCTGTGATTTCCCTGTCGCCATTTATGGACGCCTGAGCCCTTGTGAGCATGCCTTTTGCCTGGATTGTGCTAGAAGTGATTCAATGTGCTACCTGTGTGATGAACGAATCCAGAAGATTCAAACAATCAAAATGATGGAAGGAATCCTCATTTGTGCTGCTCCTCATTGTCTCAAATCTTTCTTAAAGAAAGCTGATTTTGAATCTCATATCCAAGACATCCATGCCAACCTTCTTCGACCCAGTGCAGATAAAGAAGATGGAAATGAGTCAGAGGCACAGAGCGTTAGGCAATCTACAGCGTCGGATTCCACTGCTAGAGGTCCTCAAAGACCAGTTTTTTCTCCCGGTTCAAATTCCCAGCAACATGATCTGGAAGACAAATCTCGTAGACAGACACCTAGAGAGCAACCACCATCAAGGCAAACCCTGCAGCCAAAGCCACCATATTATGGTCAACCACACCCTAGAGATAACGTGTCTGGCTCTGTAGGAGGTGGACAACAGGGTTTTCATCAACAAAGTTTTGACATGCAGCATCCCCCACAAGAACATTCCCAGTTTTCTGACAGGCAACAAGCAGTTGGTCTAGAGACCCCATTTCCTGAGTATCCAACAATGCACCCTGCACAACCTTCCAATGTTCCCTCCCTGGTTACTTCAAACCCAATGCTCAACCCTCCTATGCCATTTGGTTATCCCCCTTACCCAAACGAACGAGCTCAACCATTTTATGCTGCTCCCTATGATATGCCTAGACAGGACTCAGGTGCTGATATAAGTGGGGACCAGAGTTCATTATTGGGTTTCCCACAAGGTGCCCCAGGTGGCCCAAATTTTCCAGGAAATTATCCCCAGCCCTGGAATTCTGGAATGGGTGGTGTGCCTTTTGAACAAGCACCGGGTGGTATGGTTGTGGATCCAAGGGAAGGCAAAGGTATATTGGCACCACAGCCCATGCCCCTCCCACCACCACCACCGCCTCCACCCAACATGTCACATTTGAAACAGAACTATCATTCTGGGGAGCTTGGACATGATGGTCAGGGTTATGGGTGGCAGCATGATAACCGTGATAGCTTTGGTAGCCAAGGCTTGTGA 1320 0.4917 MLQIRLSKAPASEGSGGVKLSPVENVTVACPDHLVLADLPVAKGIGAATAASLVKTLGRRSRRQLGERVHFCVRCDFPVAIYGRLSPCEHAFCLDCARSDSMCYLCDERIQKIQTIKMMEGILICAAPHCLKSFLKKADFESHIQDIHANLLRPSADKEDGNESEAQSVRQSTASDSTARGPQRPVFSPGSNSQQHDLEDKSRRQTPREQPPSRQTLQPKPPYYGQPHPRDNVSGSVGGGQQGFHQQSFDMQHPPQEHSQFSDRQQAVGLETPFPEYPTMHPAQPSNVPSLVTSNPMLNPPMPFGYPPYPNERAQPFYAAPYDMPRQDSGADISGDQSSLLGFPQGAPGGPNFPGNYPQPWNSGMGGVPFEQAPGGMVVDPREGKGILAPQPMPLPPPPPPPPNMSHLKQNYHSGELGHDGQGYGWQHDNRDSFGSQGL 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00673 439 FunFam E3 ubiquitin-protein ligase Hakai 69 123 - -
Spst1g00673 439 ProSitePatterns Zinc finger RING-type signature. 88 97 IPR017907 -
Spst1g00673 439 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 120 IPR013083 -
Spst1g00673 439 CDD RING-HC_HAKAI-like 70 119 IPR040380 -
Spst1g00673 439 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HAKAI-RELATED 1 428 IPR040383 GO:0016567|GO:0061630
Spst1g00673 439 ProSitePatterns Zinc finger C2H2 type domain signature. 125 148 IPR013087 -
Spst1g00673 439 MobiDBLite consensus disorder prediction 153 294 - -
Spst1g00673 439 MobiDBLite consensus disorder prediction 321 439 - -
Spst1g00673 439 MobiDBLite consensus disorder prediction 235 267 - -
Spst1g00673 439 MobiDBLite consensus disorder prediction 390 406 - -
Spst1g00673 439 MobiDBLite consensus disorder prediction 166 195 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00673 1 437 C2H2 Transcription Factor Family AT5G01160 46.239 8.64e-114 336
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00673 K15685 - gmx:100817582 796.193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g00673 1 8899490 8906606 Spst1g00673 1 8899490 8906606 ECH