Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00653 ATGGCCACCTTGCAGATGTCCCAAGTTGATTTGGAGCAAGGAAACCATCGCCGTTCGGTTGTCGGAAGTGATGTAAGTGGTGAAGGGAGCTTATGCTTCTCTGATGCCGATGATGGTTCTTGTTACTCTCGTTTCTACTCAACAAATGGTGGTTCATATGATGATTACAGCTTTGCTTGTGTTTCTGATCCTGAGGTTGGGTGTGTTCCTCATTCTGGGAGAGCTTCTTCTGTTTCTGAGTGTTCTGTGGGTGTGGAAACTAGAACTGGAGTTCCTGAGATCAAGGTGCATTTGGCAAAAGTCGAGAAGGATTGTAGGATTTGTCACATGGGTTTGGAGAGCGATAGTCATGAGTCTGGTGCCCCCATAGAATTGGGTTGTTCCTGTAAGGATGATTTGGCTGCTGCTCACAAGCACTGTGCTGAGGCCTGGTTCAAGATTAAGGGAAATAGGACTTGCGAAATTTGTCATTCTGTTGCTCGGAATGTTTCTGGAGCAAACGAGGAATCGACGGAGCATGTTAGTGACGGTAACAATGCTACTACAGCAGCCACACTCTCCACACCTGCCTCTTCAGCAGAATCTCGAAGATTTTGGCACGGCCATCGCTTCCTGAATTTCTTGCTTGCTTGTATGGTTTTTGCATTTGTCATATCATGGCTTTTCCACTTTAATGTGCCATCATCGTAG 690 0.4623 MATLQMSQVDLEQGNHRRSVVGSDVSGEGSLCFSDADDGSCYSRFYSTNGGSYDDYSFACVSDPEVGCVPHSGRASSVSECSVGVETRTGVPEIKVHLAKVEKDCRICHMGLESDSHESGAPIELGCSCKDDLAAAHKHCAEAWFKIKGNRTCEICHSVARNVSGANEESTEHVSDGNNATTAATLSTPASSAESRRFWHGHRFLNFLLACMVFAFVISWLFHFNVPSS 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00653 229 ProSiteProfiles Zinc finger RING-CH-type profile. 97 163 IPR011016 GO:0008270
Spst1g00653 229 SUPERFAMILY RING/U-box 102 159 - -
Spst1g00653 229 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 94 168 IPR013083 -
Spst1g00653 229 PANTHER ZINC FINGER, RING-CH-TYPE 18 228 - -
Spst1g00653 229 MobiDBLite consensus disorder prediction 167 188 - -
Spst1g00653 229 CDD RING_CH-C4HC3_MARCH 105 157 - -
Spst1g00653 229 SMART ringv_2 104 157 IPR011016 GO:0008270
Spst1g00653 229 Pfam RING-variant domain 105 156 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00653 Spst-Chr1 8559408 8561927 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00653 63 229 C3H Transcription Factor Family AT5G05830 58.929 2.05e-66 202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00653 - - gmx:100808666 418.313
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g00653 1 8559408 8561927 Spst1g00653 1 8559408 8561927 ECH
Spst1g00653 1 8559408 8561927 Spst8g00436 8 4155831 4159778 ECH