Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00643 ATGGGTGGTGTTGCGTGGACAGAAGAAGAAGATCACTTGCTCAAGAAATGCATACAACAATATGGAGAAGGAAAGTGGCATCGTGTTCCTTTGCTGGCTGGTTTAAACAGGTGCCGAAAGAGTTGTAGACTAAGATGGCTGAACTATCTCCGTCCGAACATCAAGAGGGGAAATTTTGCGGACGAAGAAGTTGAAATGATAATCAAACTCCACAAATTATTAGGCAACAGGTGGTCACTGATTGCAGGAAGGCTACCTGGAAGGACTGCTAATGATGTGAAAAACTATTGGAACTGTCATCTGAGCAAAAAGCTAAATGCTCTAGAAGGTGAAGATAGATCAGTAAGCAGAGACGTTCAAGTGATTAGGCCTCAGGCTAGGAACATTGGTTCAAGCTCAACTAAGAGAAGGGATGAGGGAGAGTTTCCAACTGAGAAAGCAGTTCAACAAGAGAGCAGCATGTCCTCACTGACGTTTGATGCTGATGGACAGAACCAAGTGGTTGAATCACAGGAAGACAACATATATGCATGCTTGGACCAACATGGCATTGTTAATGAATTGTCAATGGACTTTCAACTAGAAGGATTTGAAGAAATGATGAATGGGGAGGGGAGTGTTAGCCAATGGGATTGGGGTGATTTGCTCCTTGACATGGATTTGTATAAGTGA 672 0.4315 MGGVAWTEEEDHLLKKCIQQYGEGKWHRVPLLAGLNRCRKSCRLRWLNYLRPNIKRGNFADEEVEMIIKLHKLLGNRWSLIAGRLPGRTANDVKNYWNCHLSKKLNALEGEDRSVSRDVQVIRPQARNIGSSSTKRRDEGEFPTEKAVQQESSMSSLTFDADGQNQVVESQEDNIYACLDQHGIVNELSMDFQLEGFEEMMNGEGSVSQWDWGDLLLDMDLYK 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00643 223 FunFam Myb transcription factor 3 55 - -
Spst1g00643 223 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 5 162 - -
Spst1g00643 223 SMART sant 55 103 IPR001005 -
Spst1g00643 223 SMART sant 2 52 IPR001005 -
Spst1g00643 223 SUPERFAMILY Homeodomain-like 5 97 IPR009057 -
Spst1g00643 223 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 51 105 IPR017930 -
Spst1g00643 223 Pfam Myb-like DNA-binding domain 56 98 IPR001005 -
Spst1g00643 223 Pfam Myb-like DNA-binding domain 5 50 IPR001005 -
Spst1g00643 223 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 50 IPR017930 -
Spst1g00643 223 Gene3D - 58 123 - -
Spst1g00643 223 ProSiteProfiles Myb-like domain profile. 6 50 IPR001005 -
Spst1g00643 223 ProSiteProfiles Myb-like domain profile. 51 101 IPR001005 -
Spst1g00643 223 CDD SANT 58 101 IPR001005 -
Spst1g00643 223 Gene3D - 4 55 - -
Spst1g00643 223 MobiDBLite consensus disorder prediction 126 154 - -
Spst1g00643 223 CDD SANT 5 50 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00643 Spst-Chr1 8438574 8440210 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00643 5 134 MYB Transcription Factor Family AT1G66370 58.156 1.23e-56 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Spst1g00643 Myb_DNA-binding 9.1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00643 K09422 - gmx:100798101 394.43