Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00627 ATGCGTGTAGAGACCAAACCCCATACCACACCCCAATTTCTCAAATCACTTCACTTTACTCACCATCACTTCCACTATTCTTCTGTGCAACTTCCGTCACCTCTTCTGCTCCACTCTATTTCCCTCTTCTCCTTCTTCATCAACTGCAACAACATCACCAACTCCACCAACCCCTCTCTTTTTAACTTTCTTTTCTTGCCTATGGCTGAGGGTTTTGAGCATTACCATGTCCCACAACAAAGTAGAAGGGACAAGCTAAGAGTTTTCGCTCAGAACCAACCCTCTTTCGTTGAATCTTCCTCTATTCTTCACCCCGCTTGTCCAACTTTAACTTCTCTCTACGATCCTTCGCTTATTCCCTCTGATTTGTTAGCTTGTGCCACCCAACAAGGTGCTGCTGCTAAGGAAGAAGGTTCCAATTTGATGATGGGGTTTGTGGAAGGAGGGGTTGTGAATGGTGATGCAATTCATGCTGTCAACAGTAATAATAACCACCACAACAACAACCCTTTTCTCTATCAGATTCAGAATCTTAGGGAATTTGGTGATGGCTACAATGATACGAGTGAAATAATGGTGTTCAAGCCTGAGCCCTTGTCTTTGTCTTTGTCTTCCCACAGTGACAACACTCATCACCCTTTGGAACTGAATCTTCAGCGATTTGGGGGTGTTATTCCAGGCTTGGTTGGAAGGAACAGTGAGGTTTCGAGGAATTCGGTTCCACTCGGACCTTTTACGGGGTATGCTTCGATATTGAAGGGATCGAGATTCCTGAAACCTGCGCAGCAATTATTAGAAGACTTATGTGATGTTGGGGTTCGTGGAATTTACGCTACCGAGAAGATTATTGCTCCTGATGCATTATTGATGGAACCTCCTCATGAGGGTTTAAGTGCTAGTGGAGTTGTTGGTGGGGAAGATTCAGTTGGGGAATATGGGAATGAGAGTAGGAAGAAGAAGTGTAGATTATTAACCATGCTTGACGAGGTTTATAGGAGGTACAGACAGTATTATCAACAGATGCATGCAGTAATAACTTCATTTGAGTATGTTGCTGGTCTTGGTAATGCAGCCCCATATGCAAGTTTGGCTTTAAATGCCATGTCCAAACACTTTAAGTGCTTGAAGAATGCTATCACTGACCAGCTTCAGTTCATCAACAAGGCTCCTTTTCAGATTAGCAACAGAAAGGATGAATCTCCAAGGTTTCACAACAGTGATAGGAGCACTTACAGCCAAAGACCAGGGTTTCTTGAGCACCAACAACCAGTTTGGCGACCTCAAAGAGGACTCCCTGAGCGTGCCGTCAGTGTTCTCAGGGCCTGGTTGTTTGAACACTTTCTTCACCCTTATCCTACTGATACCGACAAGCTAATGTTAGCTAAACAAACTGGTCTATCTCGCAACCAGGTGTCTAATTGGTTTATTAATGCAAGAGTAAGGCTTTGGAAACCAATGGTGGAAGAAATACATATGCTAGAATCACAGCAAGCTCAAAAAAGGCCACAGAGGGAAGATCAAAGTAGGAGAAACCCAAGTGTTGATCATTTACCGTCAGACAACTCTCTCGTTACTGAGAATCCATCTACCTCCATGGACAAGTTTCAGGATGCCCCTTATAAACAACACACGAGAAGTGAAATCGCTAATATGCAAGTGAGGGGTCAGGAACAGCTGAATCAAACTGACACAAGCATTCAGCATGTGGGTGTTGGAGTGAGCATGGGGAGTGGTGGTGGTGGTGGGGCAAGCAACAATAATGGTGTGTCTCTCACACTTGGTCTTCATCAAAATCATGGTATTGGGTTGTCTGAGCCCTTTGGCATGAGTGCAACTCAACGTTTTGGTGTTGCCCTTCAGACTGAGGGCTATGTTATAAGTGGTTTTGAATCACAAAATCGACATTTTGGAAGAGATGTTATCGGGGGAGGGCACTTGTTGCGTGATTTTGTAGGCTGA 1959 0.4431 MRVETKPHTTPQFLKSLHFTHHHFHYSSVQLPSPLLLHSISLFSFFINCNNITNSTNPSLFNFLFLPMAEGFEHYHVPQQSRRDKLRVFAQNQPSFVESSSILHPACPTLTSLYDPSLIPSDLLACATQQGAAAKEEGSNLMMGFVEGGVVNGDAIHAVNSNNNHHNNNPFLYQIQNLREFGDGYNDTSEIMVFKPEPLSLSLSSHSDNTHHPLELNLQRFGGVIPGLVGRNSEVSRNSVPLGPFTGYASILKGSRFLKPAQQLLEDLCDVGVRGIYATEKIIAPDALLMEPPHEGLSASGVVGGEDSVGEYGNESRKKKCRLLTMLDEVYRRYRQYYQQMHAVITSFEYVAGLGNAAPYASLALNAMSKHFKCLKNAITDQLQFINKAPFQISNRKDESPRFHNSDRSTYSQRPGFLEHQQPVWRPQRGLPERAVSVLRAWLFEHFLHPYPTDTDKLMLAKQTGLSRNQVSNWFINARVRLWKPMVEEIHMLESQQAQKRPQREDQSRRNPSVDHLPSDNSLVTENPSTSMDKFQDAPYKQHTRSEIANMQVRGQEQLNQTDTSIQHVGVGVSMGSGGGGGASNNNGVSLTLGLHQNHGIGLSEPFGMSATQRFGVALQTEGYVISGFESQNRHFGRDVIGGGHLLRDFVG 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00627 652 FunFam BEL1-like homeodomain protein 9 428 490 - -
Spst1g00627 652 Pfam Associated with HOX 251 380 IPR006563 -
Spst1g00627 652 SMART prehox3 246 381 IPR006563 -
Spst1g00627 652 MobiDBLite consensus disorder prediction 494 541 - -
Spst1g00627 652 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 165 505 - -
Spst1g00627 652 Pfam Homeobox KN domain 442 481 IPR008422 GO:0003677|GO:0006355
Spst1g00627 652 MobiDBLite consensus disorder prediction 494 513 - -
Spst1g00627 652 Gene3D - 428 490 - -
Spst1g00627 652 CDD homeodomain 425 486 IPR001356 GO:0003677
Spst1g00627 652 ProSiteProfiles 'Homeobox' domain profile. 422 485 IPR001356 GO:0003677
Spst1g00627 652 SUPERFAMILY Homeodomain-like 427 492 IPR009057 -
Spst1g00627 652 MobiDBLite consensus disorder prediction 514 541 - -
Spst1g00627 652 SMART HOX_1 425 489 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00627 Spst-Chr1 8225267 8230557 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00627 68 652 Homeobox Transcription Factor Family AT5G02030 45.338 1.15e-126 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Spst1g00627 POX 3.8e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00627 - - gmx:100790713 880.552
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g00627 1 8225267 8230557 Spst1g00627 1 8225267 8230557 ECH