Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00613 ATGCTGGCACAAGTCGATAAGCAATTTGGAGGAGCAAAGGAACACAGTGCAGTTGTTTCTACAATGATTGAGAAATATGTTTGTAGAGGAGGAATGAATCAAAGGAAAATGGATGACATGTTATGTGATCAGACTCAAGGTGACGTGACTTTTGAAAGTGGGCAAGTGTCAACTCTAAGTACTTCCACGGGGTTTTCTTCTAAGGGCACTACCTCATCGGAGTTTGGCTGCAAATTGCCTCAAAATGGCACAAAAAATGGGAGTAGTGAGCACTTCTGGTCGTCATTGAGTTCCTGGAAAGTAGAACAAATGGAAGCCACTTCCATAACGCCGTTGTTGAAGGGCTTTTGTGATCACACACAATGGAAATATGCTGTTTTTTGGAAGCTTGACCATCATTTTCCTATGACTTTGACCTGGGAAACTGGTTATCAGAAAGGAAATGAGGTCGAAGAAAGTATGTGGGATGACATCAAAATCAAATCCCCAGATGAGTTATATTGTTCAAGAGGTGATAGTACTGATTATTCAGGAGATTATTCAGTTCGACTACTCATGATAGAAATGTCTCATCGTAAATACAATTTGGGAGAAGGGGTTGTTGGCAAAATAGCTCTTGCCAGGGATCATTATTGGGTTTCCTGTGAGGATATTCTTACCAGTAAATTTGACACTGATATAATCCATGAGTGTCCTGATGAGTGGCTTCTTCAATTTGCATGTAGTATCAAGACTATTGTGCTGGTACCGGTTCCTCCACTAGGGGTTTTACAGTTTGGTTCATTTGAAGAGGTTGCTGAAGACATGGAATTTGTTACCAATGTCAAAGATAAACTCCATTCCATGCATTACATGGAAGCAAATATTACCCCTTTTAACATGGGAACTGATTATCAAGATTGGTCATTCTCAGACCTAATGCATAATTTGATGGATAGGTTGGACGAATCATCTTCTGTTACTAAAACTATATTTAAAAGTGAAGTTTCAACCACTACTGCTTCACACAGTGCAAATGGTTCAACAAGGCTGAACTCAACAATGCTATCATTTATTCAGGATGACTGTGCTGTGTCTGGACAAAATCTACTCAAATCTCTGAAAAGAGAAAGTGTAAATGAGATAGGTTGCTCATCGATTGATATGTCAACTGTTCCTAGACATATTGGTAAGATGGAGACAAAACCAAATCACATGGAAGAAGAGATATGGTCCTGGTCTCAATTGGTCCACAACGTGGGAGTTTTTGAAGAGATGTCAAATGGATTAGACTCTTTCTCTGTTAAAAATATGACACAACAACAATTTGGAGGCACTGAAAGTGGTTATGATGATGATAAGAATGTGAATGACTTCAGTTTTCCCTCGGAGTCAGAATTGCACAAAGCACTTGGATCAGTGACTTACTCTGTTGGCAATACATACAATACCTCATGTCTGATAACCAGTAAGAAAGAGAATGATCATATTAAAGGTTTTGATTTTCCCCAAGATCTAGATCCAGAATATCTTTTAGATGCTGTTGTTGGCAATTTATGCAGTGCCACTGATGATACATCTAGTATATCAAACAGTATCAGGTCTTTTACAACCATGCCAACAGAGATTAGTGGTTCCTTTCAGCCAAAACACAATTTGGAAGAAAGCAGTACTTTGATTGTAGATCATTCAGATGTGAAAAATGATCTTTTGCCTGCAGTTACGGGCAAGAGAAAATATGAATTTTCTGATCATTTTACATCATCTTTTGATGGAAATGAAAGCTCATTGATTGACGAGTTGCAACAGGAAAAGGAAGATGGTCATATGCTGCCTATAAGTGGACCGAAGCTCTCTAGCACAAATAAGAAAAGAATAAGGGTTGGTAACAACCAAAAGGCAAGGCCAAGAGATAGACAGCTTATCATGGACAGAATGAAGGAGTTGAGAGAACTTGTCCCAGATGGTGGTAGGTGTAGCATTGACAACCTCTTGGAACGGACCATAAAGCACATGCTGTACTTGAGGAAGATAACAAGTCAGGCTGAGAAACTGAAACGATTTGCCAATCGGGCGGTCGCTGAGAGCAAAAGGCAGAAAATCAACCGGAGTCACCCGGGAAGGAGCTGTGCATTTGACTTTGAGAGTGAACTAGCATGGCCTATAGTCATAGAAGATCTGGAAAGCTCAGGGCACATGCTCATAGAGATGATATGCAATGAGCATGGGCTTTTCTTGGAGATCGCTCAGGTGATCCGGAAGCTGGATGTCACCATCTTGAAAGGGATCTTGGAAAACCGTTCTAGCAGCAGCTGGGCTTGTTTCATTGTTGAGGTTCCAAGAGGTTTTCACAGAATGGATATTCTATGTCCTTTACTGCATCTTCTGCAGCTTAGGAGAAACCCTATATCGTACAAAAGCTGA 2403 0.4028 MLAQVDKQFGGAKEHSAVVSTMIEKYVCRGGMNQRKMDDMLCDQTQGDVTFESGQVSTLSTSTGFSSKGTTSSEFGCKLPQNGTKNGSSEHFWSSLSSWKVEQMEATSITPLLKGFCDHTQWKYAVFWKLDHHFPMTLTWETGYQKGNEVEESMWDDIKIKSPDELYCSRGDSTDYSGDYSVRLLMIEMSHRKYNLGEGVVGKIALARDHYWVSCEDILTSKFDTDIIHECPDEWLLQFACSIKTIVLVPVPPLGVLQFGSFEEVAEDMEFVTNVKDKLHSMHYMEANITPFNMGTDYQDWSFSDLMHNLMDRLDESSSVTKTIFKSEVSTTTASHSANGSTRLNSTMLSFIQDDCAVSGQNLLKSLKRESVNEIGCSSIDMSTVPRHIGKMETKPNHMEEEIWSWSQLVHNVGVFEEMSNGLDSFSVKNMTQQQFGGTESGYDDDKNVNDFSFPSESELHKALGSVTYSVGNTYNTSCLITSKKENDHIKGFDFPQDLDPEYLLDAVVGNLCSATDDTSSISNSIRSFTTMPTEISGSFQPKHNLEESSTLIVDHSDVKNDLLPAVTGKRKYEFSDHFTSSFDGNESSLIDELQQEKEDGHMLPISGPKLSSTNKKRIRVGNNQKARPRDRQLIMDRMKELRELVPDGGRCSIDNLLERTIKHMLYLRKITSQAEKLKRFANRAVAESKRQKINRSHPGRSCAFDFESELAWPIVIEDLESSGHMLIEMICNEHGLFLEIAQVIRKLDVTILKGILENRSSSSWACFIVEVPRGFHRMDILCPLLHLLQLRRNPISYKS 800
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00613 800 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 619 668 IPR011598 GO:0046983
Spst1g00613 800 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 113 277 IPR025610 -
Spst1g00613 800 PANTHER TRANSCRIPTION FACTOR BHLH155-LIKE ISOFORM X1-RELATED 435 795 IPR043561 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00613 Spst-Chr1 8015241 8029047 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00613 458 794 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31280 35.714 4.23e-49 183
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00613 - - gmx:100820605 1065.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g00613 1 8015241 8029047 Spst1g00613 1 8015241 8029047 ECH