Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00605 ATGGAGGAGGGTCAATGTTTGATCAGGAGTAAGAGAAAGTACTCTATGAGCTCTAGTATTGATGATTCTTCTACTAATTACCCTTCGTATGAGGACCACTCATGGGAAGAACAAGCCTTTGCTAAAGATGCAGCTTGGTCTGGTTGCGTTTGGCCACCACGATCATATTCTTGTACCTTTTGCAGAAGGGAATTTAGATCAGCACAGGCTTTAGGAGGCCATATGAATGTTCACAGAAGAGATAGAGCAAGACTAAAGCATCCATATAGCCCTCAGAATGAAATCCTCAGTGATGATCTTGAAAAAACTCAACCCCAGGATTCGGTTCAAATATCTTTTACTTCATTGGGTTTTTTATACCCATCTTCTCTTAGTGGATTGGCTCATAACACTAACCCTAATTCTGATCCTGATTCTCATGTTCCTGCTTCACCTTCCAAGGTTTTAACCACATCAGTTAACAAGAGATGCAGAGAGAAACCCCAGAATCAACTTTACAATAATTCTTCAATTTTCAAAGGATGTCATGAGTCTTCCCCTTCTCTTTCCTCTAAATCAAGGTCAAATTTAACTCATGACTTCAGATTTTGTTCAACTAGGCTCGATCTTGAAGCTAGTGTTGAAAAAAATTTGCTGGGATTGGATTCTGGGTGTAGGAGTGAGGGTGACAAGGGTAAAACTGAGGTAGGGGAGAGCATGAACTTGTTGATGAGTCGAACTCACCCACTTGTGCAGTTCGAAAATAAAGAGACAGATACAAGTTTCAAGAAGAGAAAATCAGATGCTTCATCCATTCCATTCTTCCCCAAATCATGTTCAGTTGATAGGCATCATGTGCAGTCACAGATGTTTGATTTTAGCCCTAGCTCCATAGAAGAGCTAGATCTGGAGCTAAGGCTCGGTTACAGGTCCGAGGTATAG 921 0.4104 MEEGQCLIRSKRKYSMSSSIDDSSTNYPSYEDHSWEEQAFAKDAAWSGCVWPPRSYSCTFCRREFRSAQALGGHMNVHRRDRARLKHPYSPQNEILSDDLEKTQPQDSVQISFTSLGFLYPSSLSGLAHNTNPNSDPDSHVPASPSKVLTTSVNKRCREKPQNQLYNNSSIFKGCHESSPSLSSKSRSNLTHDFRFCSTRLDLEASVEKNLLGLDSGCRSEGDKGKTEVGESMNLLMSRTHPLVQFENKETDTSFKKRKSDASSIPFFPKSCSVDRHHVQSQMFDFSPSSIEELDLELRLGYRSEV 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00605 306 ProSitePatterns Zinc finger C2H2 type domain signature. 58 78 IPR013087 -
Spst1g00605 306 Pfam C2H2-type zinc finger 56 80 - -
Spst1g00605 306 PANTHER OS07G0101800 PROTEIN 29 303 - -
Spst1g00605 306 Gene3D Classic Zinc Finger 52 112 - -
Spst1g00605 306 SUPERFAMILY beta-beta-alpha zinc fingers 53 82 IPR036236 -
Spst1g00605 306 ProSiteProfiles Zinc finger C2H2 type domain profile. 56 83 IPR013087 -
Spst1g00605 306 MobiDBLite consensus disorder prediction 129 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00605 Spst-Chr1 7850801 7851721 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00605 1 87 C2H2 Transcription Factor Family AT5G06070 52.222 3.14e-24 96.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Spst1g00605 zf-C2H2_6 1.6e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00605 - - vra:106758996 514.998
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g00605 1 7850801 7851721 Spst1g00605 1 7850801 7851721 ECH
Spst1g00605 1 7850801 7851721 Spst8g00393 8 3843074 3843889 ECH