Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00604 ATGTCTTCTTGCTATTTCCCCTTCACTCTCCAAAGAAAGATGGAGTTCAACACCCAAAACTCTCACAACTCTGAGATAAGATGGAGCTCAGATGATCAAGGTGGTCCTGGACAAGTGAAATCTTATTCTTGTTCCTTTTGCAGGAGAGGGTTCTCTAATGCACAGGCTCTAGGAGGCCACATGAACATCCACAGAAGAGATAGGGCCAAGCTCAAGCAATCTTCTGAAGAAAGCTTGCTTTCGTTGGACATCTCTACCAAGACAACAACTGATCACAATAATTACCCTTCTGATTTGGAAGAGAAAGTTTTGTTTCGGTTGGATTCTGGAGAAGATCAGAAGCATGCTAGAAATTATAAAATGCCATTCAATTTCCCTCACAAAGATGATCATGATCATGCACCCCAAAGGGGCATGTTGACTGGTACAGCAGAAATTCCTCAGCTTCCTTCTTTTGTTTCGGGGCAGCGAATTGAGGAGAAGAAAGCTGATTTAGACCTTGAACTTAGGTTAGGCCTTCATCCCCAGGAGTCGGCAACATTGAACACTAGATCGTTCTTTTGA 564 0.4309 MSSCYFPFTLQRKMEFNTQNSHNSEIRWSSDDQGGPGQVKSYSCSFCRRGFSNAQALGGHMNIHRRDRAKLKQSSEESLLSLDISTKTTTDHNNYPSDLEEKVLFRLDSGEDQKHARNYKMPFNFPHKDDHDHAPQRGMLTGTAEIPQLPSFVSGQRIEEKKADLDLELRLGLHPQESATLNTRSFF 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00604 187 ProSitePatterns Zinc finger C2H2 type domain signature. 44 64 IPR013087 -
Spst1g00604 187 SUPERFAMILY beta-beta-alpha zinc fingers 40 68 IPR036236 -
Spst1g00604 187 ProSiteProfiles Zinc finger C2H2 type domain profile. 42 69 IPR013087 -
Spst1g00604 187 PANTHER OS07G0101800 PROTEIN 23 175 - -
Spst1g00604 187 Gene3D Classic Zinc Finger 12 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00604 Spst-Chr1 7845513 7846076 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00604 38 180 C2H2 Transcription Factor Family AT3G53820 38.194 1.83e-19 78.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Spst1g00604 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g00604 1 7845513 7846076 Spst1g00604 1 7845513 7846076 ECH