Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00601 ATGGTTACCCTTTTGAAATTGCTGTCTCTTTTGGTGTTTCTTTTGATACCTGTTTCATCCCAGGTCGACCAGGTTCTGTTTGCTGGATTCAAGGATGTGGGTGCCAGCAATCTCACATTGAATGGGGTGGCTGAAATAGAGCAAAATGGAATACTCAAGTTGACAAATGAAACCAGCAGGTTAATGGGTCATGCTTTTTACCCGTCTCCTTTTCAGATGAGGAACTCAACCACAGGTAAAGTTGTCTCCTTTTCTTCCTCGTTTGCTCTGGCTATTGTCCCTGAGTACCCCAAGTTAGGTGGCCATGGCTTGGCTTTCGCAATAACAACTTCTAAGGATCTCAAGGCTCTTCCTAGCCAGTACCTTGGCCTTCTTAATTCCAGTGATAATGGTAACTTCTCCAACCACATCTTTGCTGTTGAGTTTGACACTGTGCAAGACTTTGAATTTGAGGACATTAATGACAACCATGTTGGAATAGACATCAATAGTATGCAGTCCAATAAATCTGCTAATGTTAGTTTGGTGGGTCTCAATCTCAAAAGTGGAAAACCGATTCTAGCTTGGGTTGATTATGATTCTCAATTGAATGTTATCAGCGTTGCACTTTCTCCAAATTCATCCAAACCCGAAACTCCAATCTTGTCCTTTAATGTGGATCTCTCACCCGTTTTTCATGACACTATGTATGTTGGGTTCTCTGCATCAACGGGTTTGCTTGCTAGCTCCCATTACATCTTGGGTTGGAGCTTCAAAATCAATGGACCAGCACCGCCCCTTGATCTCTCTTCTCTCCCGCAGCTTCCACAGCCAAAGAAGAAACAAACATCTTTGATAATTGGGGTTTCAGTCTCAGTTGCTGTGATTGTGTTATTAGCCATCGCCATTGGCATTTACTTTTACATGAAAATCAGGAACGCCGATGTGATTGAAGCATGGGAGCTTGAAATTGGACCACATAGGTACTCCTACCAAGAGCTCAAGAAGGCCACAAGAGGCTTCAAGGATAAAGAGCTACTTGGGCAGGGTGGTTTCGGCAGAGTTTACAAAGGAACATTGCCAAATTCCAAGATTCAGGTAGCCGTCAAGCGAGTTTCTCACGAATCTAAGCAGGGCCTAAGGGAATTCGTGTCGGAAATCGCCAGCATAGGCAGGCTTCGCCACCGGAATCTGGTTCAATTACTCGGGTGGTGCCGCCGCCGTGGCGACCTCCTTCTTGTGTATGATTTCATGGCCAATGGGAGCTTGGACAAGTACTTGTTTGATGAGCCAAAGTTTGTCCTAAGTTGGGAGCATAGGTTCAAGATCATAAAGGATGTTGCTTCAGCTCTTCTTTATCTACATGAAGGCTATGAGCAGGTGGTGATACATAGAGATGTGAAGGCCAGCAATGTGCTGCTAGATTTTGAGCTTAATGGAAGACTAGGTGATTTTGGTTTGGCAAGATTGTATGAACATGGGGCTAACCCAAGCACCACAAGAGTGGTGGGTACATTAGGCTATCTGGCTCCTGAGTTGCCTAGAACAGGAAAGGCAACTACAAGTTCTGATGTTTTTGCATTTGGGGCACTTTTGCTTGAGGTGGCTTGTGGGCGCAGGCCAATTGAGCCTAAGGCATTGCCAGAAGAGTTGGTTTTGGTGGATTGGGTGTGGGACAAGTACAAACAAGGGAGAATACTTGATGTGGTGGACCCAAAACTTAATGAAAATTTTGATGAAAAGGAGGTGTTGGTGGTGTTGAAATTGGGGTTGTTGTGCTCAAATGATTTGCCTGCTGCTAGGCCTAGCATGAGGCAAGTGGTGAGGTATTTGGATGGGGAAGTTGAAGTGCCAGAGGACTTGAAAAAGCCAGGAGATATAAGTCAGCAGGAGGGGTTTGATGAGTTCTTGCATTCACTAGCATCTTCTTCCTTTGACAAAATGAGTTCAAGCTCCAATTTTGGCAATAGAGACATGGACAGTTTTCTTTCTTTTGCTAATTCACCTCATTCACTTCTGCACAGGGGAGAAACAAGGTGA 2019 0.4468 MVTLLKLLSLLVFLLIPVSSQVDQVLFAGFKDVGASNLTLNGVAEIEQNGILKLTNETSRLMGHAFYPSPFQMRNSTTGKVVSFSSSFALAIVPEYPKLGGHGLAFAITTSKDLKALPSQYLGLLNSSDNGNFSNHIFAVEFDTVQDFEFEDINDNHVGIDINSMQSNKSANVSLVGLNLKSGKPILAWVDYDSQLNVISVALSPNSSKPETPILSFNVDLSPVFHDTMYVGFSASTGLLASSHYILGWSFKINGPAPPLDLSSLPQLPQPKKKQTSLIIGVSVSVAVIVLLAIAIGIYFYMKIRNADVIEAWELEIGPHRYSYQELKKATRGFKDKELLGQGGFGRVYKGTLPNSKIQVAVKRVSHESKQGLREFVSEIASIGRLRHRNLVQLLGWCRRRGDLLLVYDFMANGSLDKYLFDEPKFVLSWEHRFKIIKDVASALLYLHEGYEQVVIHRDVKASNVLLDFELNGRLGDFGLARLYEHGANPSTTRVVGTLGYLAPELPRTGKATTSSDVFAFGALLLEVACGRRPIEPKALPEELVLVDWVWDKYKQGRILDVVDPKLNENFDEKEVLVVLKLGLLCSNDLPAARPSMRQVVRYLDGEVEVPEDLKKPGDISQQEGFDEFLHSLASSSFDKMSSSSNFGNRDMDSFLSFANSPHSLLHRGETR 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00601 672 ProSiteProfiles Protein kinase domain profile. 334 608 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst1g00601 672 FunFam L-type lectin-domain containing receptor kinase S.4 21 259 - -
Spst1g00601 672 Gene3D - 25 257 - -
Spst1g00601 672 Pfam Protein tyrosine and serine/threonine kinase 337 604 IPR001245 GO:0004672|GO:0006468
Spst1g00601 672 Pfam Legume lectin domain 26 265 IPR001220 GO:0030246
Spst1g00601 672 ProSitePatterns Protein kinases ATP-binding region signature. 340 363 IPR017441 GO:0005524
Spst1g00601 672 PANTHER - 19 611 - -
Spst1g00601 672 SUPERFAMILY Concanavalin A-like lectins/glucanases 30 273 IPR013320 -
Spst1g00601 672 CDD lectin_legume_LecRK_Arcelin_ConA 27 255 IPR001220 GO:0030246
Spst1g00601 672 FunFam L-type lectin-domain containing receptor kinase S.4 411 617 - -
Spst1g00601 672 Gene3D Phosphorylase Kinase; domain 1 319 410 - -
Spst1g00601 672 CDD STKc_IRAK 340 606 - -
Spst1g00601 672 SMART serkin_6 334 604 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst1g00601 672 FunFam Lectin-domain containing receptor kinase A4.3 319 410 - -
Spst1g00601 672 ProSitePatterns Serine/Threonine protein kinases active-site signature. 455 467 IPR008271 GO:0004672|GO:0006468
Spst1g00601 672 Gene3D Transferase(Phosphotransferase) domain 1 411 620 - -
Spst1g00601 672 SUPERFAMILY Protein kinase-like (PK-like) 316 624 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00601 Spst-Chr1 7814623 7816641 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00601 18 647 Receptor kinase-like Gene Family AT3G55550 60.836 0.0 767
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Spst1g00601 PK_Tyr_Ser-Thr 1.4e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00601 - - gmx:100784346 1183.32