Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00600 ATGTTTCTCAAGTTTGTAGCAGTGGTGTTTGTGCTGGCAACAACAGTCGCTAGTGAAGATACCGTCAATTTCACCTATAATGGGTTCCAATCGTCATCTCATTTGTATCTTAATGGCGCTGCTGGGTTCACCTCCAATGGCGTGCTTAAACTCACCAACCACACCAAGCAACAAAAGGGTCATGCTTTCTTCCCAAATCCAATAGTTTTCAAGAACACCTCCAATGGAAGTGCATCTTCTTTCTCCACCACTTTTGTGTTTGCCATAAGTTCCGAGTATCCGAATTTGAGTGGTCATGGAATTGTTTTCGTGGTTTCTCCAACAATAGGGCTTCCAAATTCTTTGCCAAGCCAGTACCTTGGCCTGTTTGATGACACCAATAATGGCAACACCAGCAACCATGTTTTTGGGGTAGAGCTTGATACTATTCTGAACACTGAGTTTGGTGATATCAATGACAACCATGTTGGAATTGATGTCAACGAATTGAAATCCGTTACATCAGTTGCTGCAGGATATTACGGTGATGGGGGGTTTAAGAATTTGAGTCTCATCAGTGGCTACCCCATGCAGTTATGGGTGGAATATGATGGCCTAAAGAAGCAGATTGATGTTACTTTAGCTCCAATCGGCATTGGCAAACCAGAACGCCCTTTGTTATCTTGGGGCAAAGATCTTTCTCCAGTTCTTAACAATATCATGTATGTTGGATTCTCATCCTCAACTGGGTCAATTCAAAGTTCTCATTATGTTTTGGGCTGGAGCTTTAAGGTGAATGGCCAGGCTCAACAACTTGCCATCTCTGAACTTCCCAAGCTACCTAGATCAGGCAGTAAAGAAGAGTCTAAGGTTCTTATTGTTGCGTTGCCTCTCATAGCATTCAGTTTGGTTATCATGGTGTCTCTAGCAGTGGTTCATGTCATCAAAAGGAAGAAGTTCACGGAGTTGCTTGAAGATTGGGAGCAAGACTATGGTCCTCATAGGTTCAAGTACAAAGATCTTAGCCTGGCAACAAAGGGGTTCAGGGAAAAGGAGCTATTGGGAAGTGGTGGATTTGGTAGAGTCTACAAAGGTGTGATGCCAATTTCAAAAATTGAGGTTGCAGTGAAGAAGGTGTCCCATGAATCAAGACAAGGGATGAGAGAATTTGTGGCAGAAATCGTTAGCATTGGTCGTCTTAGGCACAGGAATTTGGTTCCCCTTCTTGGGTATTGCAGGCGCAAAGGAGAGCTGCTATTGGTCTATGACTACATGCCAAATGGAAGCCTTGATAAGTATCTCTATAACAAACCAAGAGTGACCCTGAATTGGAGCCAGAGATTTAGAATCACCAAAGGGGTTGCTTCAGGTCTGTTTTATCTACATGAGGAATGGGAGCAAGTTGTGGTCCACAGAGACATTAAGGCTAGCAATGTGCTACTTGATGCTGAATTGAATGGTAGATTGGGGGACTTTGGTCTTTCAAGGTTGTATGAGCATGGAACTGACCCTCACACTACTCATGTGGTTGGAACTCTGGGGTATCTAGCACCAGAGCACACTAGAACAGGTAAGGCCACTACAAACTCTGATGTGTTTGCTTTTGGTGCATTTATGTTAGAGGTGGTTTGTGGAAGAAGGCCAATAGAGCAAGTGGGGGGATCTGGTAGTGAAATTCTGGTTGATTGGGTGTATAATTATTGGAAAAGAGGTGAGATTCTTGAGGCAAGGGATCCAAACTTGGGAACAAATTATAGGCCAGAGGAGGTGGAGTTGGTGCTGAAACTAGCTTTGTTGTGCTCACATTCCGATCCTCTGGCTAGGCCAAGCATGCGCCAAGTTGTTCAGTACTTGGAGAGGGATGTGCCTCTGCCAGACTTGTCTTTGCTTAGCTTATCTTCCACTGGCTTAACTTTTGGTCTGCATGAAGACTTTCAGGATTGTCCAATGTCTTATCCTTCATCTATGGATAGGCCAATCTCCCATACTTCCTCAATTGCTGAATCACTTCTCTCTGGGGGGCGTTGA 2007 0.4415 MFLKFVAVVFVLATTVASEDTVNFTYNGFQSSSHLYLNGAAGFTSNGVLKLTNHTKQQKGHAFFPNPIVFKNTSNGSASSFSTTFVFAISSEYPNLSGHGIVFVVSPTIGLPNSLPSQYLGLFDDTNNGNTSNHVFGVELDTILNTEFGDINDNHVGIDVNELKSVTSVAAGYYGDGGFKNLSLISGYPMQLWVEYDGLKKQIDVTLAPIGIGKPERPLLSWGKDLSPVLNNIMYVGFSSSTGSIQSSHYVLGWSFKVNGQAQQLAISELPKLPRSGSKEESKVLIVALPLIAFSLVIMVSLAVVHVIKRKKFTELLEDWEQDYGPHRFKYKDLSLATKGFREKELLGSGGFGRVYKGVMPISKIEVAVKKVSHESRQGMREFVAEIVSIGRLRHRNLVPLLGYCRRKGELLLVYDYMPNGSLDKYLYNKPRVTLNWSQRFRITKGVASGLFYLHEEWEQVVVHRDIKASNVLLDAELNGRLGDFGLSRLYEHGTDPHTTHVVGTLGYLAPEHTRTGKATTNSDVFAFGAFMLEVVCGRRPIEQVGGSGSEILVDWVYNYWKRGEILEARDPNLGTNYRPEEVELVLKLALLCSHSDPLARPSMRQVVQYLERDVPLPDLSLLSLSSTGLTFGLHEDFQDCPMSYPSSMDRPISHTSSIAESLLSGGR 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00600 668 Gene3D Transferase(Phosphotransferase) domain 1 418 616 - -
Spst1g00600 668 ProSitePatterns Protein kinases ATP-binding region signature. 347 371 IPR017441 GO:0005524
Spst1g00600 668 ProSitePatterns Serine/Threonine protein kinases active-site signature. 462 474 IPR008271 GO:0004672|GO:0006468
Spst1g00600 668 CDD lectin_legume_LecRK_Arcelin_ConA 22 260 IPR001220 GO:0030246
Spst1g00600 668 Gene3D - 19 271 - -
Spst1g00600 668 CDD STKc_IRAK 347 613 - -
Spst1g00600 668 SUPERFAMILY Concanavalin A-like lectins/glucanases 21 277 IPR013320 -
Spst1g00600 668 SUPERFAMILY Protein kinase-like (PK-like) 322 623 IPR011009 -
Spst1g00600 668 Pfam Legume lectin domain 22 271 IPR001220 GO:0030246
Spst1g00600 668 Pfam Protein kinase domain 341 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst1g00600 668 Gene3D Phosphorylase Kinase; domain 1 326 417 - -
Spst1g00600 668 FunFam L-type lectin-domain containing receptor kinase S.4 418 624 - -
Spst1g00600 668 FunFam Lectin-domain containing receptor kinase A4.3 326 417 - -
Spst1g00600 668 ProSiteProfiles Protein kinase domain profile. 341 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst1g00600 668 PANTHER - 38 616 - -
Spst1g00600 668 FunFam L-type lectin-domain containing receptor kinase V.9 21 263 - -
Spst1g00600 668 SMART serkin_6 341 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00600 Spst-Chr1 7808344 7810350 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00600 17 668 Receptor kinase-like Gene Family AT2G37710 63.720 0.0 840
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Spst1g00600 Pkinase 1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00600 - - gmx:100802293 1154.04