Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00594 ATGTCGTTGCACCGTGCTGAAGAAGATGAGCTCTACGAGCAACTGTGGAAGGCTTGTGCAGGACCGCATGTGGATGTTCCTCGTGTAGGCCAAAGAGTCTTCTACTTCCCTCAGGGACACATGGAACAGTTAGAAGTATCAACAAATCAGGAACTAAATCAAAGGATTCCACTGTTCAAACTTCCCTCCGAGATCCTTTGTCGTGTCGTCAACGTCCATTTACTGGCTGAACAAGAAACAGATGAGGTTTATGCGCAGATTACTCTGGTGCCGGAAAATAATAAAACTGAGCCTACATGCCCTGATCCGTGCCGTTCTGAAGTTCCAAGGCCAAGAGTTCACTCCTTCTGCAAGGTCTTAACGGCCTCTGATACAAGCACCCATGGTGGCTTCTCTGTCCTCAGGAAGCATGCCACCGAATGTCTTCCAGCATTGGACATGTCTAAATCAACCCCAACTCAGGAATTGGTTGCCAAGGATCTTCATGGATATGAATGGCGCTTTAAGCATATATTTAGAGGTCAGCCACGTAGACACTTGCTCACAACTGGATGGAGTACTTTTGTGACTTCCAAGAGATTAGTTGCTGGAGACACCTTTGTGTTTCTAAGAGGGAACAATGGAGAACTGCGAATTGGAGTGAGGCGTCTTACTCCTGTTCAGAACAGCATGCCATCATCTGTGATTTCTAGTCAGAGCATGCACCTAGGAATTCTTGCAACTGCATCTCATGCTGTAGCAACTCAGACTCTTTTTGTGGTATATTATAAGCCAAGGACAAGCCAGTTTATTGTAAGTGTGGACAGGTATTTAGAGGTTATCAACCAAGAGTTTAATATTGGCATGAGATTGAAGACGAGGTTTGAAGGGGATGATTCTACCGATTCAGAGAAAAGATTTTCGGGTACAATAATTGGAGTAGAGGATATTTCCCCTCATTGGGTAAATTCAAAATGGCGATCACTTAAGGTTCAATGGGACGAACCTCCATCTTTTCCAAGGCCTGATAGAGTTTCACCATGGGAGATAGAACCGATTCTGGCTTCTGTTCCTACAACAATATCATCTCAATCTGTTCCAATAAAGAATAAAAGGCCTCGACAAGCAAGTGATGTTCCAGATCTTGGAGACACACCATTAATTGCCCCTACTTTCTGGGACGCTGGGCTGACCCAGTCTGACATCACACAACTTAGTGTTATGGCCGAAAGCAAAAGGAGTGAAAGCAGTACTCATATGTGGCATCATACTAACAAAAACAGCAGCAATGTTATATCAATGAATCAGACAAGAGGAAGTTGGCTGTCTTCTCCTTCTCAATTATATCATGACACAACCGATGATAGCAAGAGCATCTCAGTTTGGCCTATTTCAAAAACTCACGCAGAAAGATTGAACAATGATCATTTCCTTGACCAGGTTGAGAAGGAGAGCAGTAAAGTAGAGCCTGCAACAGGCTGCAGATTGTTTGGAATTGACCTTATTGATCATTCAAGGAACAACTCTCTTTCTGTAGATAATACCTCTGGAGTCACCACTGAGGGCAGAACTGATGTAAACCATGAAACTGATATCTCGAAGGCTTCTAAAGAATGGACACAAGAACAGCTACAAGTATCCCCAAAAGAGACTCAAAACAAGCAAGTTTGTAGCAGAAGTTGCACTAAGGTTCAAATGCAGGGGGTTGCAGTGGGTCGTGCTGTGGACTTGACCACATTGGTTGGGTATGATCAACTTGTAGATGAATTGGAGAAGATGTTTGACATAAAGGGACAGCTTCAACACAGGAACAAGTGGGAAATTGTATTCACTGATGATGAAGGGGATATGATGCTTGTTGGTGATGATCCATGGCCTGAATTCTGTAACATGGTGAGAAGAATCTTCATCTCGTCCACCCAGGACGTGCACAAACTGGGCTCAGGGAGCAAACTACCTATGACTTCAATGGAAGATATTGTGATAAGCTCAGACAAAACTGAGACCTGA 1989 0.4379 MSLHRAEEDELYEQLWKACAGPHVDVPRVGQRVFYFPQGHMEQLEVSTNQELNQRIPLFKLPSEILCRVVNVHLLAEQETDEVYAQITLVPENNKTEPTCPDPCRSEVPRPRVHSFCKVLTASDTSTHGGFSVLRKHATECLPALDMSKSTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFLRGNNGELRIGVRRLTPVQNSMPSSVISSQSMHLGILATASHAVATQTLFVVYYKPRTSQFIVSVDRYLEVINQEFNIGMRLKTRFEGDDSTDSEKRFSGTIIGVEDISPHWVNSKWRSLKVQWDEPPSFPRPDRVSPWEIEPILASVPTTISSQSVPIKNKRPRQASDVPDLGDTPLIAPTFWDAGLTQSDITQLSVMAESKRSESSTHMWHHTNKNSSNVISMNQTRGSWLSSPSQLYHDTTDDSKSISVWPISKTHAERLNNDHFLDQVEKESSKVEPATGCRLFGIDLIDHSRNNSLSVDNTSGVTTEGRTDVNHETDISKASKEWTQEQLQVSPKETQNKQVCSRSCTKVQMQGVAVGRAVDLTTLVGYDQLVDELEKMFDIKGQLQHRNKWEIVFTDDEGDMMLVGDDPWPEFCNMVRRIFISSTQDVHKLGSGSKLPMTSMEDIVISSDKTET 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00594 662 SMART B3_2 116 218 IPR003340 GO:0003677
Spst1g00594 662 Pfam Auxin response factor 242 323 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Spst1g00594 662 Pfam B3 DNA binding domain 116 216 IPR003340 GO:0003677
Spst1g00594 662 Gene3D - 113 217 IPR015300 -
Spst1g00594 662 FunFam Auxin response factor 114 218 - -
Spst1g00594 662 Pfam AUX/IAA family 413 588 IPR033389 -
Spst1g00594 662 Pfam AUX/IAA family 595 636 IPR033389 -
Spst1g00594 662 Gene3D - 548 640 - -
Spst1g00594 662 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 9 640 IPR044835 GO:0003677|GO:0006355|GO:0009725
Spst1g00594 662 FunFam Auxin response factor 277 350 - -
Spst1g00594 662 Gene3D - 277 350 - -
Spst1g00594 662 SUPERFAMILY DNA-binding pseudobarrel domain 107 245 IPR015300 -
Spst1g00594 662 CDD B3_DNA 114 216 IPR003340 GO:0003677
Spst1g00594 662 FunFam Auxin response factor 547 640 - -
Spst1g00594 662 ProSiteProfiles PB1 domain profile. 552 635 IPR000270 GO:0005515
Spst1g00594 662 MobiDBLite consensus disorder prediction 505 524 - -
Spst1g00594 662 ProSiteProfiles B3 DNA-binding domain profile. 116 218 IPR003340 GO:0003677
Spst1g00594 662 SUPERFAMILY CAD & PB1 domains 555 628 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00594 Spst-Chr1 7757271 7761625 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00594 11 647 B3 DNA Binding Superfamily AT4G23980 57.669 0.0 697
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Spst1g00594 AUX_IAA 2.1e-07 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00594 K14486 - gmx:100780060 1146.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g00594 1 7757271 7761625 Spst4g01426 4 52251483 52255204 PCT